Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | BG256_RS04185 | Genome accession | NZ_CP017811 |
| Coordinates | 851542..852048 (-) | Length | 168 a.a. |
| NCBI ID | WP_071162873.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain NML-Hia-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 846542..857048
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BG256_RS04155 (BG256_04155) | nudC | 847034..847828 (-) | 795 | WP_071162870.1 | NAD(+) diphosphatase | - |
| BG256_RS04160 (BG256_04160) | nfuA | 847896..848492 (-) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| BG256_RS04165 (BG256_04165) | - | 848568..849254 (-) | 687 | WP_071162871.1 | ComF family protein | - |
| BG256_RS04170 (BG256_04170) | comE | 849267..850604 (-) | 1338 | WP_071162872.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| BG256_RS04175 (BG256_04175) | comD | 850614..851027 (-) | 414 | WP_005693727.1 | pilus assembly protein PilP | Machinery gene |
| BG256_RS04180 (BG256_04180) | comC | 851024..851545 (-) | 522 | WP_048951462.1 | competence protein ComC | Machinery gene |
| BG256_RS04185 (BG256_04185) | comB | 851542..852048 (-) | 507 | WP_071162873.1 | competence protein ComB | Machinery gene |
| BG256_RS04190 (BG256_04190) | comA | 852049..852846 (-) | 798 | WP_071162874.1 | competence protein ComA | Machinery gene |
| BG256_RS04195 (BG256_04195) | - | 852944..855538 (+) | 2595 | WP_071162875.1 | penicillin-binding protein 1A | - |
| BG256_RS04200 (BG256_04200) | - | 855611..856456 (+) | 846 | WP_071162876.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| BG256_RS04205 (BG256_04205) | - | 856609..856938 (+) | 330 | WP_071162877.1 | YbaB/EbfC family nucleoid-associated protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19766.73 Da Isoelectric Point: 8.5473
>NTDB_id=203130 BG256_RS04185 WP_071162873.1 851542..852048(-) (comB) [Haemophilus influenzae strain NML-Hia-1]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKLFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSILNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKLFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSILNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
Nucleotide
Download Length: 507 bp
>NTDB_id=203130 BG256_RS04185 WP_071162873.1 851542..852048(-) (comB) [Haemophilus influenzae strain NML-Hia-1]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGCCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTTGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCTCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGCTTGGAAGGTAACGCACAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGCCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTTGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCTCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGCTTGGAAGGTAACGCACAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
98.214 |
100 |
0.982 |
| comB | Haemophilus influenzae Rd KW20 |
98.214 |
100 |
0.982 |