Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CN03_RS00820 Genome accession   NZ_CP017810
Coordinates   173616..175133 (+) Length   505 a.a.
NCBI ID   WP_075272588.1    Uniprot ID   -
Organism   Thalassolituus oleivorans strain K188     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 168616..180133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CN03_RS00805 (CN03_00805) - 168765..169535 (+) 771 WP_075272585.1 SDR family oxidoreductase -
  CN03_RS00810 (CN03_00810) - 169614..170681 (+) 1068 WP_075272586.1 SMP-30/gluconolactonase/LRE family protein -
  CN03_RS00815 (CN03_00815) - 170694..173360 (-) 2667 WP_075272587.1 S8 family peptidase -
  CN03_RS00820 (CN03_00820) comM 173616..175133 (+) 1518 WP_075272588.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CN03_RS00825 (CN03_00825) - 175290..175520 (+) 231 WP_025264424.1 antitoxin VbhA family protein -
  CN03_RS00830 (CN03_00830) - 175543..176160 (+) 618 WP_075272589.1 Fic family protein -
  CN03_RS00835 (CN03_00835) - 176241..176444 (+) 204 WP_075272590.1 hypothetical protein -
  CN03_RS00840 (CN03_00840) - 176407..178014 (-) 1608 WP_025264427.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55062.92 Da        Isoelectric Point: 7.2751

>NTDB_id=203090 CN03_RS00820 WP_075272588.1 173616..175133(+) (comM) [Thalassolituus oleivorans strain K188]
MSLAKVYTRAQLGIESPQVQVEVHLSNGLPSLSLVGMPETAVRESKDRVRSAIINSQFEFPAKRITINLAPADLPKEGGR
YDLAIALGILAASDQIPADALEKYEFIGELALSGALQPVSGVLPSALQCTEKQRILILPAGNAAEVSLCSTGDYRIASGL
SEVTAFLHGQHQLTQVRPNLEACALARLGEDLQDVRGQPQARRALEIAASGQHNLLFIGPPGTGKTMLASRLPGILPPMT
EDEALVSASIYSISHQDDGWKQRWRQRPFRAPHHTASGVALVGGGGNPKPGEISLAHGGVLFLDELPEYSRKVLDVLREP
LESGRIVISRANRSITFPARFQLIAAMNPCPCGYFGDPSGRCHCSQEQIRRYQGQTSGPLLDRIDLHIEVPPLPVAVLQQ
APLSEPSEQVQQRVIAARARQIQRQGCPNAELSGATRDRVCALREGDQAWLLDTIERLQLSARGYHRLLNVARTIADLAE
AEHIEKIHLMEALGYRSLDRYRQVT

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=203090 CN03_RS00820 WP_075272588.1 173616..175133(+) (comM) [Thalassolituus oleivorans strain K188]
ATGTCACTCGCCAAGGTCTATACCCGCGCACAATTGGGTATTGAATCGCCCCAAGTCCAAGTTGAAGTTCACCTATCGAA
CGGTTTGCCATCGTTGAGTTTAGTCGGCATGCCCGAGACCGCCGTGCGCGAATCAAAAGATCGCGTGCGCAGCGCCATCA
TTAACAGCCAGTTTGAATTTCCGGCAAAGCGCATCACCATTAATTTGGCCCCTGCGGATTTACCCAAAGAAGGCGGTCGT
TATGATTTAGCCATTGCTTTAGGCATACTCGCCGCTTCTGATCAAATCCCTGCCGACGCTTTAGAAAAATACGAGTTTAT
TGGTGAGCTGGCCCTAAGTGGTGCTTTGCAGCCGGTATCTGGGGTTTTACCTTCAGCGTTACAGTGCACAGAAAAACAAC
GGATTTTAATACTGCCCGCAGGTAATGCCGCGGAAGTCAGTTTGTGCAGCACAGGTGATTACCGTATCGCTTCTGGGTTG
AGTGAGGTAACGGCGTTTTTGCATGGCCAGCATCAGCTAACTCAGGTACGGCCTAATCTTGAAGCGTGTGCATTAGCACG
CTTGGGAGAAGATTTACAAGATGTTCGCGGTCAGCCACAGGCCAGACGAGCGTTAGAAATCGCCGCAAGTGGGCAACATA
ATCTGCTGTTTATCGGTCCCCCTGGAACGGGCAAAACCATGCTCGCCAGTCGTTTGCCGGGGATTTTACCGCCAATGACC
GAAGACGAAGCCTTAGTGTCGGCGTCGATTTATTCGATTAGTCATCAAGATGATGGCTGGAAGCAGCGCTGGCGTCAGCG
TCCTTTTCGCGCACCGCATCATACGGCATCTGGGGTTGCACTGGTGGGAGGCGGAGGAAATCCTAAGCCAGGAGAAATAT
CGTTAGCTCATGGCGGTGTGCTCTTTCTAGATGAGCTACCGGAATACAGTCGCAAAGTACTCGACGTATTGCGCGAACCG
CTTGAAAGCGGCCGTATTGTGATCAGTCGTGCTAATCGATCCATCACCTTTCCGGCTCGATTTCAGCTTATCGCGGCTAT
GAATCCATGTCCTTGTGGTTATTTCGGTGATCCCTCGGGGCGTTGCCATTGCAGCCAAGAGCAAATACGGCGCTATCAAG
GACAAACGTCTGGGCCACTGCTTGATAGAATTGACCTGCATATTGAAGTGCCGCCGCTTCCCGTGGCTGTTTTGCAACAA
GCACCGTTATCAGAGCCAAGTGAGCAGGTGCAGCAACGGGTGATCGCGGCGCGTGCGCGTCAAATACAACGGCAAGGCTG
CCCTAACGCAGAATTATCGGGAGCAACGCGTGATCGCGTGTGTGCGCTACGAGAAGGTGATCAAGCCTGGCTGTTGGATA
CTATCGAACGACTGCAATTATCCGCTCGTGGCTATCACCGTTTATTGAACGTCGCCCGTACCATTGCTGATTTAGCCGAA
GCCGAGCATATCGAGAAAATTCATCTTATGGAGGCATTAGGTTATCGCAGCTTGGATCGGTACCGGCAGGTGACTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.03

100

0.552
  comM Vibrio cholerae strain A1552

55.467

99.604

0.552
  comM Haemophilus influenzae Rd KW20

54.832

100

0.55
  comM Glaesserella parasuis strain SC1401

54.438

100

0.547
  comM Legionella pneumophila str. Paris

50.895

99.604

0.507
  comM Legionella pneumophila strain ERS1305867

50.895

99.604

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.059

100

0.451

Multiple sequence alignment