Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   DN94_03800 Genome accession   CP007565
Coordinates   711981..712928 (+) Length   315 a.a.
NCBI ID   AHX74838.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 706981..717928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_03775 - 707330..708010 (+) 681 AHX74833.1 membrane protein -
  DN94_03780 - 708161..708862 (+) 702 AHX74834.1 glucosamine-6-phosphate deaminase -
  DN94_03785 - 708934..709890 (-) 957 AHX74835.1 hypothetical protein -
  DN94_03790 - 709986..710705 (+) 720 AHX74836.1 16S rRNA pseudouridylate synthase -
  DN94_03795 - 710778..711929 (+) 1152 AHX74837.1 MFS transporter -
  DN94_03800 coiA 711981..712928 (+) 948 AHX74838.1 competence protein CoiA Machinery gene
  DN94_03805 pepF 712944..714749 (+) 1806 AHX74839.1 oligopeptidase PepB Regulator
  DN94_03810 - 714944..715570 (+) 627 AHX74840.1 HAD family hydrolase -
  DN94_03815 - 715644..716351 (+) 708 AHX74841.1 methyltransferase -
  DN94_03820 - 716412..717341 (+) 930 AHX74842.1 foldase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 37844.59 Da        Isoelectric Point: 9.7723

>NTDB_id=20302 DN94_03800 AHX74838.1 711981..712928(+) (coiA) [Streptococcus agalactiae strain 138spar]
MLIAKDRQGNLINLLESHPGKGQYFCPTCCSAVRLKAGRIMRRHFAHISLKNCQFHHENESNEHLQLKAKLYMSLSRENE
TMLEHHLPEINQIADLFVNETLALEVQCSRLSEQRLRERTKAYLQADFQVRWLLGEKLWLKHRLTNLHKQFLQFSQSIGF
HIWELDLRLEVLRLKYLIYEDLRGHVYYLSKTCPLSGDVLAFLKWPYQSKNLNFYKVKQDRNIRDYVRRQLRYGNQFWLR
KQEKAYLSGHNLLTQELTMFFPQIQPPRVDTDFCQITNSLTSFYQNFTNYYRKNKNNLDQTLYPPVFYDKIVTKN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=20302 DN94_03800 AHX74838.1 711981..712928(+) (coiA) [Streptococcus agalactiae strain 138spar]
ATGTTAATTGCTAAAGACAGACAAGGAAATTTAATTAATCTACTCGAGTCTCATCCGGGAAAGGGACAGTATTTTTGTCC
AACTTGTTGTTCAGCTGTAAGGTTAAAAGCAGGTCGAATCATGAGAAGACACTTTGCACATATTAGTCTAAAAAATTGTC
AGTTTCATCATGAAAATGAGTCTAATGAGCACTTGCAATTAAAAGCAAAGTTATATATGAGTTTAAGTAGAGAGAATGAA
ACTATGCTCGAGCATCATTTGCCAGAAATTAATCAGATTGCAGATTTATTTGTGAATGAGACATTGGCTTTAGAAGTTCA
GTGTAGCCGACTATCAGAGCAGCGACTTAGGGAGCGAACAAAAGCATATCTACAGGCAGACTTTCAAGTGAGATGGTTAC
TAGGGGAAAAACTCTGGTTAAAGCATCGTTTAACAAATCTACATAAACAATTTTTACAATTTTCTCAAAGTATCGGATTT
CATATTTGGGAGTTAGATTTGAGGTTAGAAGTACTGAGGCTAAAATATTTGATTTACGAAGATTTACGCGGACATGTCTA
TTACTTAAGTAAAACTTGCCCTCTTAGTGGAGACGTTCTAGCATTTTTGAAGTGGCCATACCAATCAAAGAATCTAAATT
TTTATAAGGTTAAACAAGACAGAAATATCAGAGATTATGTGCGTCGGCAGTTACGCTATGGCAATCAATTTTGGTTACGA
AAACAAGAAAAGGCCTACCTTTCTGGTCATAATCTATTGACCCAAGAGCTAACGATGTTCTTCCCTCAAATACAGCCGCC
ACGTGTAGATACTGATTTTTGTCAAATAACAAATTCTCTAACATCGTTTTATCAGAATTTTACAAATTATTATCGAAAAA
ATAAGAATAACTTGGACCAAACACTTTATCCCCCTGTATTTTATGATAAAATAGTCACTAAGAATTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

48.418

100

0.486
  coiA Streptococcus pneumoniae Rx1

48.418

100

0.486
  coiA Streptococcus pneumoniae D39

48.418

100

0.486
  coiA Streptococcus pneumoniae R6

48.418

100

0.486
  coiA Streptococcus mitis NCTC 12261

48.418

100

0.486
  coiA Lactococcus lactis subsp. cremoris KW2

39.441

100

0.403

Multiple sequence alignment