Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   Spy49_0870 Genome accession   CP000829
Coordinates   870247..870927 (+) Length   226 a.a.
NCBI ID   ACI61178.1    Uniprot ID   -
Organism   Streptococcus pyogenes NZ131     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 865247..875927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Spy49_0866 - 865673..866404 (+) 732 ACI61174.1 Class B acid phosphatase precursor -
  Spy49_0867 - 866582..868114 (+) 1533 ACI61175.1 Voltage-gated chloride channel family protein -
  Spy49_0868 - 868277..868891 (+) 615 ACI61176.1 Platelet activating factor, putative -
  Spy49_0869 - 869071..870180 (+) 1110 ACI61177.1 hypothetical protein -
  Spy49_0870 radC 870247..870927 (+) 681 ACI61178.1 RadC-like DNA repair protein Machinery gene
  Spy49_0871c - 870929..871624 (-) 696 ACI61179.1 Glutamine amidotransferase, class I -
  Spy49_0872c - 871634..872278 (-) 645 ACI61180.1 Redox-sensing transcriptional repressor rex -
  Spy49_0873c - 872530..872877 (-) 348 ACI61181.1 Conserved hypothetical protein -
  Spy49_0874c - 872867..873994 (-) 1128 ACI61182.1 Cysteine desulfurase -
  Spy49_0875c prs 873991..874971 (-) 981 ACI61183.1 Ribose-phosphate pyrophosphokinase -
  Spy49_0876c - 875111..875689 (-) 579 ACI61184.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25742.96 Da        Isoelectric Point: 7.3866

>NTDB_id=20262 Spy49_0870 ACI61178.1 870247..870927(+) (radC) [Streptococcus pyogenes NZ131]
MYSIKCDDNKAMPRERLMRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLQELQHLAGIGKVKA
IEIKAMIELVSRILATDKTLTDSVLTSVQVAEKMMAALGDKKQEHLVVLYLDNQNRIIEEKTIFIGTVRRSLAEPREILY
YACKNMATSLIVIHNHPSGNIEPSSNDYCFTEKIKRSCEDLGIICLDHIIVSYKDYYSFREKSTLF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=20262 Spy49_0870 ACI61178.1 870247..870927(+) (radC) [Streptococcus pyogenes NZ131]
ATGTATTCTATAAAATGTGATGATAATAAAGCCATGCCAAGAGAACGTTTGATGCGACTAGGAGCAGAGTCTCTAAGTAA
TCAAGAATTATTAGCAATTTTATTACGAACAGGTAATAAAGAAAAGCATGTCTTAGAGCTGTCATCCTATCTTTTATCGC
ATTTAGACAGTCTGGCAGATTTTAAAAAGATGTCTTTGCAAGAATTACAACATTTGGCAGGTATAGGAAAAGTTAAAGCG
ATTGAAATTAAAGCTATGATTGAGTTGGTTTCCCGAATTTTAGCGACAGATAAGACATTAACTGATAGCGTATTAACCAG
TGTTCAGGTCGCTGAAAAAATGATGGCAGCTTTAGGAGATAAAAAACAAGAGCATTTAGTCGTATTGTATTTAGATAATC
AAAATCGTATTATTGAAGAAAAAACTATTTTTATTGGGACTGTCCGACGTTCACTTGCAGAACCAAGAGAAATTTTATAC
TATGCCTGTAAAAATATGGCGACTAGTCTCATTGTTATTCATAATCATCCTTCAGGAAATATTGAACCTAGTTCTAACGA
TTATTGCTTTACTGAAAAAATAAAACGATCATGTGAAGATTTAGGCATTATCTGTCTAGATCACATTATCGTTAGCTATA
AAGATTATTATAGTTTTCGAGAAAAATCAACCCTTTTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(107-222)

UPF0758 N-terminal (UPF0758_N)

(10-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

57.965

100

0.58
  radC Streptococcus pneumoniae R6

57.522

100

0.575
  radC Streptococcus pneumoniae D39

57.522

100

0.575
  radC Streptococcus gordonii str. Challis substr. CH1

55.752

100

0.558
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

43.119

96.46

0.416
  radC Haemophilus influenzae Rd KW20

37.9

96.903

0.367

Multiple sequence alignment