Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BKK80_RS03330 Genome accession   NZ_CP017754
Coordinates   775898..777436 (-) Length   512 a.a.
NCBI ID   WP_071010865.1    Uniprot ID   A0A1D9GWF0
Organism   Cupriavidus malaysiensis strain USMAA1020 isolate pure     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 770898..782436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKK80_RS03310 (BKK80_03310) - 772914..773444 (-) 531 WP_071010862.1 TlpA disulfide reductase family protein -
  BKK80_RS03315 (BKK80_03315) - 773637..774179 (-) 543 WP_231907971.1 thioredoxin -
  BKK80_RS03320 (BKK80_03320) - 774282..774854 (+) 573 WP_071010863.1 hypothetical protein -
  BKK80_RS03325 (BKK80_03325) - 774946..775590 (+) 645 WP_071010864.1 LysE family transporter -
  BKK80_RS03330 (BKK80_03330) comM 775898..777436 (-) 1539 WP_071010865.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BKK80_RS03335 (BKK80_03335) - 777536..777787 (-) 252 WP_071010866.1 accessory factor UbiK family protein -
  BKK80_RS03340 (BKK80_03340) - 778190..779008 (+) 819 WP_071010867.1 TorF family putative porin -
  BKK80_RS03345 (BKK80_03345) - 779062..779400 (+) 339 WP_071010868.1 P-II family nitrogen regulator -
  BKK80_RS03350 (BKK80_03350) - 779435..780979 (+) 1545 WP_071010869.1 ammonium transporter -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53973.99 Da        Isoelectric Point: 8.2902

>NTDB_id=202530 BKK80_RS03330 WP_071010865.1 775898..777436(-) (comM) [Cupriavidus malaysiensis strain USMAA1020 isolate pure]
MGLALLHSRALTGIEARSVSVETHLANGLPAFNIVGLAETEVRESRERVRAAILNSGFEFPNRRITVNLAPADLPKESGR
FDLPIALGILAASGQLPLNGLDGLEFAGELSLSGELRPVRGALAMAMGLARDNQARAAQGAAPRAFVVAAGNGPEAALIA
GLAVLPAPTLLAVCAHLRPGGGERLVPAMPLALPAQPAVQADLAEVRGQVQARRALEVAAAGQHSALLVGPPGTGKSMLA
QRFPALLPPMTLDEALESAAVLSLTAGGFQAARWGRRPFRAPHHTASAAALVGGGTAPRPGEISLAHHGVLFLDELPEFE
RRVLEVLREPLESGHITISRAAHQADFPARFHFIAAMNPCPCGYLGHPTRPCRCTPDQVLRYQSRLSGPLLDRIDLQVEV
PAQSQQEVLDGPPGEASEAVRARVLQARARQLARQGKPNADLAPGETEAHCPLTPAAQSLLREAMAGFGWSARAYFRALK
IARTIADLADAGQVDAPHAAEAIQYRRVLRTP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=202530 BKK80_RS03330 WP_071010865.1 775898..777436(-) (comM) [Cupriavidus malaysiensis strain USMAA1020 isolate pure]
ATGGGACTGGCACTGCTGCACAGCCGGGCGCTGACCGGCATCGAAGCCCGCTCGGTATCGGTCGAGACCCACCTGGCCAA
CGGCCTGCCGGCCTTCAATATCGTGGGGCTGGCCGAGACCGAGGTGCGTGAAAGCCGCGAGCGCGTGCGCGCCGCCATCC
TCAACAGCGGCTTCGAATTCCCCAACCGGCGCATCACGGTCAACCTGGCCCCGGCCGACCTGCCCAAGGAGTCCGGCCGC
TTCGACCTGCCGATCGCCCTGGGCATCCTGGCCGCCAGCGGGCAACTGCCGCTCAATGGCCTGGACGGGCTGGAGTTCGC
CGGCGAACTGTCGCTGTCGGGCGAACTGCGTCCGGTGCGCGGTGCGCTGGCCATGGCGATGGGGCTGGCGCGCGACAACC
AGGCGCGCGCAGCGCAGGGCGCCGCACCGCGCGCCTTCGTGGTCGCTGCGGGGAACGGGCCGGAAGCGGCCCTGATCGCC
GGGCTGGCTGTGCTGCCGGCACCGACGCTGCTCGCCGTCTGCGCCCACCTGCGGCCCGGCGGCGGCGAGCGGCTGGTGCC
GGCCATGCCGCTCGCCCTGCCTGCGCAGCCGGCCGTCCAGGCCGACCTGGCCGAAGTGCGCGGCCAGGTGCAGGCCCGCC
GCGCGCTGGAGGTGGCGGCGGCCGGCCAACACTCCGCGCTGCTGGTCGGCCCGCCGGGCACAGGCAAGTCGATGCTGGCG
CAGCGCTTCCCCGCGCTGCTGCCACCGATGACGCTGGACGAAGCGCTCGAATCGGCCGCCGTGCTGAGCCTCACCGCGGG
TGGCTTCCAGGCCGCGCGCTGGGGCCGGCGGCCGTTCCGCGCACCGCACCACACCGCCTCGGCCGCGGCGCTGGTCGGCG
GCGGCACCGCACCGCGCCCCGGAGAGATCTCGCTGGCCCACCATGGCGTGCTGTTCCTCGACGAGCTGCCGGAGTTCGAG
CGCAGGGTGCTGGAAGTCCTGCGTGAACCCCTGGAATCCGGCCACATCACCATCTCGCGTGCCGCCCACCAGGCCGATTT
TCCCGCCCGCTTTCACTTCATCGCCGCCATGAACCCCTGTCCCTGCGGCTACCTGGGCCACCCCACGCGGCCGTGCCGCT
GCACGCCGGACCAGGTGCTGCGCTACCAGTCGCGCCTGTCCGGCCCGCTGCTGGACCGCATCGACCTGCAGGTGGAGGTG
CCGGCACAGAGCCAGCAGGAGGTGTTGGACGGGCCGCCGGGCGAGGCCAGCGAAGCCGTGCGCGCTCGCGTGCTGCAGGC
GCGCGCGCGCCAGCTGGCGCGCCAGGGCAAGCCCAACGCCGATCTCGCGCCGGGTGAGACCGAGGCACATTGCCCGCTGA
CGCCCGCGGCGCAATCCCTGTTGCGTGAGGCGATGGCCGGCTTCGGCTGGTCGGCGCGCGCCTACTTCCGGGCGCTGAAG
ATCGCCCGCACCATCGCCGACCTCGCCGATGCCGGCCAGGTGGACGCGCCGCACGCGGCGGAAGCCATCCAATACCGCCG
CGTACTGCGCACGCCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-407)

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D9GWF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.516

100

0.535
  comM Vibrio campbellii strain DS40M4

52.335

100

0.525
  comM Haemophilus influenzae Rd KW20

50.096

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.195

100

0.504
  comM Legionella pneumophila str. Paris

50.195

100

0.504
  comM Glaesserella parasuis strain SC1401

49.515

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.843

100

0.426

Multiple sequence alignment