Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BKK79_RS08540 Genome accession   NZ_CP017748
Coordinates   1955446..1956009 (-) Length   187 a.a.
NCBI ID   WP_071037538.1    Uniprot ID   -
Organism   Cupriavidus sp. USMAA2-4 isolate pure     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1950446..1961009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKK79_RS08520 (BKK79_08520) - 1950995..1952863 (+) 1869 WP_071037535.1 copper resistance system multicopper oxidase -
  BKK79_RS08525 (BKK79_08525) - 1952890..1953927 (+) 1038 WP_071038472.1 copper resistance protein B -
  BKK79_RS08530 (BKK79_08530) copC 1953959..1954345 (+) 387 WP_071037536.1 copper homeostasis periplasmic binding protein CopC -
  BKK79_RS08535 (BKK79_08535) copD 1954350..1955273 (+) 924 WP_071037537.1 copper homeostasis membrane protein CopD -
  BKK79_RS08540 (BKK79_08540) ssb 1955446..1956009 (-) 564 WP_071037538.1 single-stranded DNA-binding protein Machinery gene
  BKK79_RS08545 (BKK79_08545) - 1956299..1957546 (-) 1248 WP_071010928.1 MFS transporter -
  BKK79_RS08550 (BKK79_08550) uvrA 1957968..1960832 (+) 2865 WP_071037539.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19404.21 Da        Isoelectric Point: 5.9417

>NTDB_id=202495 BKK79_RS08540 WP_071037538.1 1955446..1956009(-) (ssb) [Cupriavidus sp. USMAA2-4 isolate pure]
MASVNKVILVGNLGADPETRYMPSGDAVTNIRLATTDRYRDKASGDMKELTEWHRVAFFGKLAEIAGQYLRKGSQVYIEG
RIRTRKWQDQSGQDKYSTEIVADQMQMLGARQGMGGGGDDMGGGGGGGGYGGGREASGGGYGGGRGQGGGQGGGQGGGQG
GGQQGGARRQQQAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=202495 BKK79_RS08540 WP_071037538.1 1955446..1956009(-) (ssb) [Cupriavidus sp. USMAA2-4 isolate pure]
ATGGCATCGGTCAACAAAGTCATTCTCGTCGGCAACCTGGGCGCGGACCCGGAAACCCGCTACATGCCCAGCGGCGACGC
CGTGACCAACATCCGCCTGGCTACCACCGACCGCTATCGCGACAAGGCCAGCGGCGACATGAAGGAGCTGACCGAATGGC
ACCGCGTGGCCTTCTTCGGCAAGCTCGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGCTCCCAGGTCTACATCGAAGGG
CGCATCCGCACCCGCAAGTGGCAGGACCAGTCCGGCCAGGACAAGTACAGCACCGAGATCGTCGCCGACCAGATGCAGAT
GCTGGGGGCGCGCCAGGGTATGGGTGGCGGCGGTGACGACATGGGCGGCGGTGGCGGTGGTGGTGGCTACGGCGGCGGCC
GCGAGGCCTCGGGCGGTGGCTACGGCGGTGGCCGCGGCCAGGGCGGCGGTCAGGGCGGCGGTCAGGGCGGCGGTCAGGGC
GGTGGCCAGCAGGGCGGCGCACGGCGCCAGCAGCAGGCACCGTCGAACGGCTTCGAGGACATGGACGACGATATCCCGTT
CTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.85

100

0.545
  ssb Glaesserella parasuis strain SC1401

48.148

100

0.487
  ssb Neisseria meningitidis MC58

42.703

98.93

0.422
  ssb Neisseria gonorrhoeae MS11

42.703

98.93

0.422

Multiple sequence alignment