Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BKP64_RS12980 Genome accession   NZ_CP017715
Coordinates   2785612..2787144 (-) Length   510 a.a.
NCBI ID   WP_070970772.1    Uniprot ID   A0A1D9GN88
Organism   Marinobacter salinus strain Hb8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2780612..2792144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP64_RS12950 (BKP64_12950) metW 2781432..2782037 (+) 606 WP_070970754.1 methionine biosynthesis protein MetW -
  BKP64_RS12955 (BKP64_12955) - 2782034..2782495 (+) 462 WP_070970757.1 DUF4426 domain-containing protein -
  BKP64_RS12960 (BKP64_12960) rdgB 2782501..2783100 (+) 600 WP_070970760.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  BKP64_RS12965 (BKP64_12965) hemW 2783105..2784253 (+) 1149 WP_070970764.1 radical SAM family heme chaperone HemW -
  BKP64_RS12970 (BKP64_12970) - 2784253..2784786 (+) 534 WP_070970766.1 hypothetical protein -
  BKP64_RS12975 (BKP64_12975) trmB 2784803..2785537 (-) 735 WP_070970770.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  BKP64_RS12980 (BKP64_12980) comM 2785612..2787144 (-) 1533 WP_070970772.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BKP64_RS12985 (BKP64_12985) - 2787230..2787484 (-) 255 WP_070970775.1 accessory factor UbiK family protein -
  BKP64_RS12990 (BKP64_12990) glnK 2787867..2788205 (+) 339 WP_008173268.1 P-II family nitrogen regulator -
  BKP64_RS12995 (BKP64_12995) - 2788278..2789549 (+) 1272 WP_070970778.1 ammonium transporter -
  BKP64_RS13000 (BKP64_13000) speE 2789620..2790501 (-) 882 WP_070970781.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54572.64 Da        Isoelectric Point: 7.7698

>NTDB_id=202210 BKP64_RS12980 WP_070970772.1 2785612..2787144(-) (comM) [Marinobacter salinus strain Hb8]
MLAIVHSRASIGVSAPPVTVEVHLSGGLPALSIVGLPETGVRESKERVRSALLNAGFEFPARRITINLAPADLPKEGGRF
DLPIALGILAASGQIPVDRLGQWEFVGELSLDGALRPLKGVLPAVLAARRDGRALLVPQANAGEAALASHDDVLASAHLL
AVCEHLCERARLVPLARTLLAQESGQDEKVPDLSDVRGQSVPRRALEVAAAGNHNLLFFGPPGTGKSMLASRLPGILPGL
SDEDAMEVASVHSVAGMPEGHCAWRRPPFRAPHHTASAVAMVGGGSSPRPGEISLAHRGVLFLDELPEFERRVLEVLREP
METGEIVISRAARQVSFPARFQVVGAMNPCPCGYSGHPAIECQCTPQQVLRYRSKISGPLLDRFDLHVEVPVQSGEVLMQ
QGGDGESSVDVRERVARARARQAARHGLNSSLSGRELHRVCPLDIHGERLLTGAMEKLGLSARALHRILRVARTLADLDG
SEIPAQKHLVEALGYRQLDRQQGRNTLVSS

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=202210 BKP64_RS12980 WP_070970772.1 2785612..2787144(-) (comM) [Marinobacter salinus strain Hb8]
ATGCTTGCCATCGTCCATTCCCGCGCCAGCATCGGCGTGTCTGCCCCGCCGGTAACGGTTGAAGTGCACCTCTCCGGCGG
TTTGCCTGCTCTTTCCATCGTCGGCTTGCCGGAAACCGGCGTCCGTGAAAGTAAAGAGCGGGTTCGTAGCGCCCTGCTTA
ATGCCGGTTTCGAATTCCCGGCCCGCCGAATTACCATCAATCTTGCGCCTGCTGACCTCCCCAAGGAGGGCGGACGGTTT
GATCTGCCCATTGCCCTTGGCATTCTGGCGGCCTCAGGTCAGATTCCTGTTGACCGGCTGGGCCAGTGGGAATTTGTTGG
AGAGTTATCGCTCGACGGCGCGCTCAGGCCCTTGAAAGGTGTTTTGCCGGCCGTTTTGGCTGCACGCAGGGATGGTCGGG
CCCTGCTGGTTCCCCAGGCCAATGCCGGCGAAGCCGCACTGGCCAGTCACGACGATGTGCTTGCCTCAGCGCACCTGCTT
GCAGTGTGTGAGCATCTTTGTGAGCGCGCCAGACTGGTGCCCTTGGCCAGGACATTGCTGGCACAGGAGTCTGGCCAGGA
TGAAAAGGTGCCTGACCTGTCCGATGTGCGTGGTCAAAGCGTGCCGCGAAGGGCCCTGGAGGTTGCCGCCGCGGGCAACC
ACAACCTTCTGTTCTTCGGTCCGCCAGGGACGGGCAAGAGCATGTTGGCCAGCCGTTTGCCCGGCATTCTGCCAGGCCTG
AGTGACGAGGACGCGATGGAAGTCGCCAGTGTCCATTCTGTTGCAGGAATGCCTGAGGGGCACTGTGCCTGGCGCAGGCC
GCCATTCAGGGCGCCGCATCATACGGCCTCGGCAGTTGCTATGGTGGGCGGGGGCAGCAGCCCGCGGCCCGGTGAAATCT
CTCTTGCGCATCGTGGTGTTCTGTTTCTTGATGAGCTGCCTGAGTTCGAGCGCCGGGTACTTGAAGTGCTTCGCGAACCC
ATGGAAACCGGGGAAATCGTCATAAGCCGCGCTGCACGCCAGGTCAGCTTCCCTGCCCGGTTTCAGGTGGTGGGCGCAAT
GAATCCCTGCCCTTGTGGCTACAGCGGGCATCCAGCCATCGAGTGCCAGTGCACGCCCCAGCAGGTGTTGCGTTACCGCT
CAAAGATTTCCGGGCCATTACTGGACCGGTTCGATCTGCATGTGGAAGTTCCTGTCCAGAGTGGCGAGGTGCTGATGCAG
CAGGGCGGTGATGGTGAGTCCAGCGTTGACGTTCGGGAGCGGGTGGCCCGGGCAAGGGCCCGGCAGGCTGCCCGTCATGG
GTTGAATTCGTCTCTGTCTGGTCGCGAATTGCACCGGGTTTGTCCCCTGGATATCCACGGAGAACGTCTGTTAACCGGCG
CCATGGAGAAGCTCGGGTTGTCAGCGAGGGCCTTGCACCGGATATTGCGAGTGGCCCGAACCCTGGCCGACCTTGATGGC
AGTGAAATACCAGCGCAGAAACATCTGGTAGAGGCGTTGGGTTATCGACAGCTGGACCGTCAGCAGGGACGAAACACTCT
GGTGTCCTCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Subunit ChlI of Mg-chelatase (ChlI)

(20-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D9GN88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57

98.039

0.559
  comM Vibrio campbellii strain DS40M4

56.349

98.824

0.557
  comM Glaesserella parasuis strain SC1401

54.672

98.627

0.539
  comM Haemophilus influenzae Rd KW20

54.274

98.627

0.535
  comM Legionella pneumophila str. Paris

50.2

98.039

0.492
  comM Legionella pneumophila strain ERS1305867

50.2

98.039

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.094

100

0.463

Multiple sequence alignment