Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SSU05_2039 Genome accession   CP000407
Coordinates   1941031..1941480 (-) Length   149 a.a.
NCBI ID   ABP91005.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1936031..1946480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_2034 - 1936621..1936992 (-) 372 ABP91000.1 Fructose-2,6-bisphosphatase -
  SSU05_2035 - 1936999..1937442 (-) 444 ABP91001.1 dUTPase -
  SSU05_2036 rcrQ 1937548..1938186 (-) 639 ABP91002.1 ABC-type multidrug transport system, ATPase and permease component Regulator
  SSU05_2037 - 1938138..1939331 (-) 1194 ABP91003.1 ABC-type multidrug transport system, ATPase and permease component -
  SSU05_2038 - 1939332..1941038 (-) 1707 ABP91004.1 putative ABC transporter (ATP-binding protein) -
  SSU05_2039 rcrR 1941031..1941480 (-) 450 ABP91005.1 Transcriptional regulator Regulator
  SSU05_2040 - 1941702..1942718 (+) 1017 ABP91006.1 glycerol-3-phosphate dehydrogenase -
  SSU05_2041 - 1942763..1943662 (+) 900 ABP91007.1 glucose-1-phosphate-uridylyltransferase -
  SSU05_2042 - 1943680..1944357 (-) 678 ABP91008.1 conserved hypothetical protein -
  SSU05_2043 - 1944341..1944883 (-) 543 ABP91009.1 putative 5-formyltetrahydrofolate cyclo-ligase -
  SSU05_2044 - 1944924..1946051 (-) 1128 ABP91010.1 hippurate hydrolase-like protein -
  SSU05_2046 - 1946061..1946357 (-) 297 ABP91011.1 Tetrahydrodipicolinate N-succinyltransferase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17284.90 Da        Isoelectric Point: 8.9142

>NTDB_id=20210 SSU05_2039 ABP91005.1 1941031..1941480(-) (rcrR) [Streptococcus suis 05ZYH33]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEAETFVKDIEAELKISKSVASNLVKRMEKNGFIQ
VLPSKVDKRFKQLVLTEKGQGKICHLKAFHEEMHHSLFWGIQKEDFDLVKQVGNQLKVNIQRYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=20210 SSU05_2039 ABP91005.1 1941031..1941480(-) (rcrR) [Streptococcus suis 05ZYH33]
ATGGGACATACTATTGCAGATTTTCGGAACTTGCTCAATCAGATTGAACAAATTAGTGAAACCATTGCAAAAGAATACGA
TGTGGAGCACTTGGCTGGTCCACAGGGCTGGGCCTTGCGCTTCATTGCGGAACGGTCGGAAGCCGAAACCTTTGTAAAAG
ATATAGAAGCGGAATTAAAGATTTCCAAATCGGTTGCCAGCAATCTGGTCAAGAGAATGGAGAAAAATGGCTTTATCCAA
GTCCTTCCCTCTAAGGTTGACAAACGCTTCAAACAGCTGGTTTTGACAGAGAAGGGACAAGGGAAGATATGTCACCTGAA
AGCTTTTCATGAAGAAATGCACCATTCACTTTTTTGGGGCATTCAAAAAGAGGACTTTGACTTGGTTAAACAGGTGGGCA
ATCAATTAAAAGTAAATATTCAACGCTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.662

95.302

0.416

Multiple sequence alignment