Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   SPG_0024 Genome accession   CP001015
Coordinates   21470..21706 (+) Length   78 a.a.
NCBI ID   ACF55111.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 16470..26706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_0021 - 20407..20724 (-) 318 ACF56285.1 IS1167 transposase -
  SPG_0022 - 20757..20900 (-) 144 ACF55379.1 IS1167 transposase -
  SPG_0023 - 20948..21154 (-) 207 ACF55587.1 IS1167 transposase -
  SPG_0024 comW 21470..21706 (+) 237 ACF55111.1 hypothetical protein Regulator
  SPG_0025 purA 21895..23223 (+) 1329 ACF56085.1 adenylosuccinate synthetase -
  SPG_0026 - 23424..23744 (+) 321 ACF56556.1 Cytosine/adenosine deaminase -
  SPG_0027 - 23710..23826 (+) 117 ACF55099.1 Cytosine/adenosine deaminase -
  SPG_0028 dut 24077..24520 (+) 444 ACF55619.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  SPG_0029 - 24480..25037 (+) 558 ACF56348.1 phosphoglycerate mutase family protein -
  SPG_0030 radA 25150..26412 (+) 1263 ACF55916.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9686.14 Da        Isoelectric Point: 6.7051

>NTDB_id=20171 SPG_0024 ACF55111.1 21470..21706(+) (comW) [Streptococcus pneumoniae G54]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=20171 SPG_0024 ACF55111.1 21470..21706(+) (comW) [Streptococcus pneumoniae G54]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGGTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

98.718

100

0.987
  comW Streptococcus pneumoniae D39

98.718

100

0.987
  comW Streptococcus pneumoniae R6

98.718

100

0.987
  comW Streptococcus pneumoniae TIGR4

98.718

100

0.987
  comW Streptococcus mitis SK321

76.923

100

0.769
  comW Streptococcus mitis NCTC 12261

76.623

98.718

0.756

Multiple sequence alignment