Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SPG_0030 Genome accession   CP001015
Coordinates   25150..26412 (+) Length   420 a.a.
NCBI ID   ACF55916.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 20150..31412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_0021 - 20407..20724 (-) 318 ACF56285.1 IS1167 transposase -
  SPG_0022 - 20757..20900 (-) 144 ACF55379.1 IS1167 transposase -
  SPG_0023 - 20948..21154 (-) 207 ACF55587.1 IS1167 transposase -
  SPG_0024 comW 21470..21706 (+) 237 ACF55111.1 hypothetical protein Regulator
  SPG_0025 purA 21895..23223 (+) 1329 ACF56085.1 adenylosuccinate synthetase -
  SPG_0026 - 23424..23744 (+) 321 ACF56556.1 Cytosine/adenosine deaminase -
  SPG_0027 - 23710..23826 (+) 117 ACF55099.1 Cytosine/adenosine deaminase -
  SPG_0028 dut 24077..24520 (+) 444 ACF55619.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  SPG_0029 - 24480..25037 (+) 558 ACF56348.1 phosphoglycerate mutase family protein -
  SPG_0030 radA 25150..26412 (+) 1263 ACF55916.1 DNA repair protein RadA Machinery gene
  SPG_0031 - 26485..26982 (+) 498 ACF56376.1 conserved hypothetical protein -
  SPG_0032 - 27007..27537 (+) 531 ACF55024.1 conserved hypothetical protein -
  SPG_0033 - 27530..27661 (+) 132 ACF55482.1 conserved hypothetical protein -
  SPG_0034 prs1 27806..28774 (+) 969 ACF56211.1 ribose-phosphate pyrophosphokinase 1 -
  SPG_0035 - 29315..29548 (-) 234 ACF55597.1 conserved hypothetical protein -
  SPG_0036 - 29541..29657 (-) 117 ACF56323.1 hypothetical protein -
  SPG_0037 - 29872..30186 (-) 315 ACF56761.1 conserved hypothetical protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45805.76 Da        Isoelectric Point: 5.2355

>NTDB_id=20172 SPG_0030 ACF55916.1 25150..26412(+) (radA) [Streptococcus pneumoniae G54]
MEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLS
QVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREV
TAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEV
LNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYL
KSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGITLP
KEIQVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=20172 SPG_0030 ACF55916.1 25150..26412(+) (radA) [Streptococcus pneumoniae G54]
GTGGAAGAGGTTGAGGTTGCCGAAGTTAAGAATGCGCGTGTGTCCTTGACAGGTGAGAAAACCAAGCCCATGAAACTAGC
TGAGGTGACTTCCATCAATGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGTGTGCTTGGAGGCGGAGTGGTAC
CAGGAAGTCTCGTCCTNATCGGTGGGGATCCTGGGATTGGGAAATCAACTCTTCTCCTACAAGTCTCAACCCAGTTGTCC
CAAGTGGGGACAGTTCTCTATGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAACTACGTGCAGAGCGCTTAGGTGATAT
TGATAGTGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGTGCAGAAGTGGAGCGTATACAGCCAGACTTTC
TCATTATTGATTCCATCCAGACCATCATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGTTTCTCAGGTGCGTGAAGTG
ACCGCTGAACTCATGCAGTTGGCCAAGACCAATAACATTGCCATCTTTATCGTAGGTCATGTGACCAAAGAAGGAACCTT
GGCTGGGCCTCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAGCGTCACCACACCTTTCGTATTT
TGAGAGCGGTCAAAAATCGTTTTGGTTCCACTAATGAGATTGGGATTTTTGAGATGCAGTCGGGCGGCTTGGTTGAGGTA
CTCAATCCGAGTCAAGTTTTCCTAGAAGAGCGTTTGGATGGGGCGACTGGTTCCTCCATCGTTGTAACCATGGAAGGGAC
GCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCGACCATGTTTGGAAATGCCAAGCGTACTACGACAGGACTTG
ATTTTAACCGTGCTAGCTTGATTATGGCTGTTTTGGAAAAACGGGCAGGGCTTCTCTTGCAAAATCAGGATGCCTATCTC
AAATCTGCTGGTGGTGTTAAATTGGATGAACCTGCCATTGACTTGGCTGTTGCAGTTGCTATTGCTTCGAGCTACAAAGA
CAAGCCAACTAATCCTCAGGAATGTTTTGTCGGAGAACTGGGCTTGACAGGAGAGATTCGGCGCGTGAATCGTATTGAGC
AACGCATCAACGAAGCTGCTAAACTGGGCTTTACTAAGATTTATGTACCTAAGAATTCCTTGACAGGAATCACTCTGCCT
AAGGAAATTCAGGTCATTGGCGTGACAACGATTCAGGAAGTTTTGAAAAAGGTCTTTGCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(327-392)

AAA domain (AAA_25)

(30-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

99.762

100

0.998
  radA Streptococcus pneumoniae D39

99.762

100

0.998
  radA Streptococcus pneumoniae R6

99.762

100

0.998
  radA Streptococcus pneumoniae TIGR4

99.762

100

0.998
  radA Streptococcus mitis NCTC 12261

99.286

100

0.993
  radA Streptococcus mitis SK321

99.286

100

0.993
  radA Bacillus subtilis subsp. subtilis str. 168

64.39

97.619

0.629

Multiple sequence alignment