Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   SSU05_1145 Genome accession   CP000407
Coordinates   1093009..1093491 (+) Length   160 a.a.
NCBI ID   ABP90111.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1088009..1098491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_1140 - 1089256..1090536 (-) 1281 ABP90105.1 D-beta-hydroxybutyrate permease -
  SSU05_1139 - 1090520..1090624 (+) 105 ABP90106.1 hypothetical protein -
  SSU05_1141 - 1090617..1091105 (-) 489 ABP90107.1 putative 2-amino-4-hydroxy-6-hydroxymethylpteridine pyrophosphokinase -
  SSU05_1142 - 1091102..1091464 (-) 363 ABP90108.1 dihydroneopterin aldolase -
  SSU05_1143 - 1091457..1092269 (-) 813 ABP90109.1 Dihydropteroate synthase and related enzymes -
  SSU05_1144 - 1092278..1092841 (-) 564 ABP90110.1 GTP cyclohydrolase I -
  SSU05_1145 mutX 1093009..1093491 (+) 483 ABP90111.1 NTP pyrophosphohydrolase including oxidative damage repair enzymes Machinery gene
  SSU05_1146 - 1093539..1094216 (-) 678 ABP90112.1 hypothetical protein -
  SSU05_1147 - 1094203..1094946 (-) 744 ABP90113.1 SPX domain-containing protein involved in vacuolar polyphosphate accumulation -
  SSU05_1148 - 1095139..1095441 (+) 303 ABP90114.1 hypothetical protein -
  SSU05_1149 - 1095462..1095740 (-) 279 ABP90115.1 Uncharacterized protein conserved in bacteria -
  SSU05_1150 - 1095783..1098182 (-) 2400 ABP90116.1 Phenylalanyl-tRNA synthetase beta subunit -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18540.89 Da        Isoelectric Point: 4.4960

>NTDB_id=20172 SSU05_1145 ABP90111.1 1093009..1093491(+) (mutX) [Streptococcus suis 05ZYH33]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREIFEETGLTVTKHAVKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGDKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=20172 SSU05_1145 ABP90111.1 1093009..1093491(+) (mutX) [Streptococcus suis 05ZYH33]
ATGACCAAGAAACCTGTCCAACTGGCTACGATTTGCTACATTGATAATGGCAAAGAATTTCTCCTGCTCCATCGCAATAA
AAAAGAAAACGATGTCCACCAGGGGAAATGGATTGGGGTCGGTGGTAAGCTGGAACCCGGTGAAACACCGCAGGCTTGTG
CCATTCGAGAAATCTTTGAGGAAACTGGGCTTACTGTAACGAAGCATGCTGTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACTGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTCTTATTGACTGCAATGAAGGTGA
CTTAGAGTGGGTTCCCTATGACCAAGTCTTGTCCAAACCAACTTGGGAGGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGACAAATTGCTTGATTATAGCGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

81.046

95.625

0.775

Multiple sequence alignment