Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   CHF17_RS10595 Genome accession   NZ_CP022537
Coordinates   2055357..2055947 (-) Length   196 a.a.
NCBI ID   WP_000272489.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 874391     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2050357..2060947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF17_RS10560 (CHF17_02077) - 2050378..2050695 (-) 318 WP_000940933.1 DUF1292 domain-containing protein -
  CHF17_RS10565 (CHF17_02078) ruvX 2050721..2051140 (-) 420 WP_001873911.1 Holliday junction resolvase RuvX -
  CHF17_RS10570 (CHF17_02079) - 2051140..2051406 (-) 267 WP_000507056.1 IreB family regulatory phosphoprotein -
  CHF17_RS10575 (CHF17_02080) spx 2051608..2052006 (-) 399 WP_000591161.1 transcriptional regulator Spx -
  CHF17_RS10580 (CHF17_02081) recA 2052222..2053361 (-) 1140 WP_001085741.1 recombinase RecA -
  CHF17_RS10585 (CHF17_02082) cinA 2053435..2054694 (-) 1260 WP_001200982.1 competence/damage-inducible protein A Machinery gene
  CHF17_RS10590 (CHF17_02083) - 2054783..2055334 (-) 552 WP_000817340.1 DNA-3-methyladenine glycosylase I -
  CHF17_RS10595 (CHF17_02084) ruvA 2055357..2055947 (-) 591 WP_000272489.1 Holliday junction branch migration protein RuvA Machinery gene
  CHF17_RS10600 (CHF17_02085) - 2055949..2057181 (-) 1233 WP_000657474.1 MFS transporter -
  CHF17_RS10605 (CHF17_02086) hexB 2057213..2059186 (-) 1974 WP_000034615.1 DNA mismatch repair endonuclease MutL Machinery gene
  CHF17_RS10615 (CHF17_02087) - 2059412..2059615 (+) 204 WP_000191849.1 cold shock domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21682.92 Da        Isoelectric Point: 5.7448

>NTDB_id=201461 CHF17_RS10595 WP_000272489.1 2055357..2055947(-) (ruvA) [Streptococcus agalactiae strain 874391]
MYDYIKGKLSKITAKFIVVETAGLGYVIYVANPYSFSGYVNQEVTIYLHQVIRDDAHLLFGFHTENEKEIFLNLISVSGI
GPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKTAQQMILDLSGKFVEASGESATSRKVSSEQNSNLEEAMEALL
ALGYKATELKKVKAFFEGTNDTVEQYIKSSLKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=201461 CHF17_RS10595 WP_000272489.1 2055357..2055947(-) (ruvA) [Streptococcus agalactiae strain 874391]
ATGTACGATTATATTAAAGGAAAATTGAGTAAAATAACGGCTAAATTTATTGTTGTGGAAACAGCTGGATTGGGATACGT
GATATATGTGGCAAATCCCTACTCTTTTTCAGGTTACGTTAATCAAGAAGTTACCATCTACTTACATCAAGTCATTCGCG
ATGATGCACATCTTTTATTTGGTTTTCATACGGAAAATGAAAAAGAAATTTTTCTTAATTTAATTTCAGTATCAGGAATT
GGTCCAACGACCGCTTTAGCAATTATTGCAGTCGATGACAATGAAGGTCTCGTAAGTGCCATTGATAATAGTGATATTAA
GTATTTGACTAAATTTCCAAAGATAGGAAAAAAAACAGCACAACAGATGATCCTTGATTTGTCAGGGAAGTTTGTAGAAG
CTTCTGGTGAGAGTGCGACTAGTCGTAAGGTTAGCTCTGAGCAGAATAGCAATCTTGAAGAAGCTATGGAAGCTTTGTTA
GCGTTGGGGTATAAGGCGACTGAATTGAAAAAAGTAAAAGCCTTTTTTGAAGGTACGAACGATACTGTGGAGCAATACAT
CAAATCTAGTTTGAAGATGTTGATGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

68.02

100

0.684
  ruvA Streptococcus pneumoniae D39

68.02

100

0.684
  ruvA Streptococcus pneumoniae TIGR4

67.513

100

0.679
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408

Multiple sequence alignment