Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BJP62_RS11825 Genome accession   NZ_CP017668
Coordinates   2504494..2505987 (+) Length   497 a.a.
NCBI ID   WP_070529829.1    Uniprot ID   A0A1D9BFB1
Organism   Jeongeupia sp. USM3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2499494..2510987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJP62_RS11795 (BJP62_11795) - 2500637..2501380 (+) 744 WP_070529824.1 BPSS1780 family membrane protein -
  BJP62_RS11800 (BJP62_11800) - 2501400..2501774 (+) 375 WP_070529825.1 diacylglycerol kinase -
  BJP62_RS11805 (BJP62_11805) - 2501832..2502170 (+) 339 WP_070529826.1 antibiotic biosynthesis monooxygenase -
  BJP62_RS11810 (BJP62_11810) - 2502192..2502605 (-) 414 WP_070529827.1 DUF2721 domain-containing protein -
  BJP62_RS11815 (BJP62_11815) - 2502606..2503355 (-) 750 WP_070529828.1 LytTR family DNA-binding domain-containing protein -
  BJP62_RS11820 (BJP62_11820) - 2503321..2504355 (-) 1035 WP_083300888.1 sensor histidine kinase -
  BJP62_RS11825 (BJP62_11825) comM 2504494..2505987 (+) 1494 WP_070529829.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BJP62_RS11830 (BJP62_11830) - 2505979..2506353 (-) 375 WP_070529830.1 hypothetical protein -
  BJP62_RS11835 (BJP62_11835) - 2506469..2507410 (-) 942 WP_070529831.1 GlxA family transcriptional regulator -
  BJP62_RS11840 (BJP62_11840) - 2507424..2508614 (-) 1191 WP_070529832.1 MFS transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52074.13 Da        Isoelectric Point: 8.2619

>NTDB_id=201398 BJP62_RS11825 WP_070529829.1 2504494..2505987(+) (comM) [Jeongeupia sp. USM3]
MSIALIHSRALLGLAAQPVTVEVHLANGLPACTLVGLPDAEVREARERVRAALSVAGFEFPARRITVNLAPADLPKSSGQ
FDLPIAIGLLAASGQIPAERLAGYEFAGELGLAGDLRPVRGALALARAAAQAGRTLIVPAGCAGEAALYPGATVLAAEHL
LQVCRHFATGEALAPAVAVQAVAAEPQPDLVDVRGQVQARRALEIAAAGRHSLLLVGPPGTGKSMLAQRLPGLLPALDAD
EAIDIAAVQSLSRSGFDVRRFGLRPFRSPHHTSSPVALVGGGSVPQPGEISLAHHGVLFMDELPEFDRKVLEVLREPLET
GEVHIARAAHSACFPARFQLVAAMNPCPCGYLGHPQKACRCTPEQLARYRGRLSGPLLDRIDLIVEVPALPDTALLAAPD
GEASEVVRGRTDRAYRRAAARQGKANAALAGKDIDVHCAMDEAGRAMLQAALSRLKLSARAFHRVLRVARTIADLAGAET
IAAAHIAEAVQYRRGLG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=201398 BJP62_RS11825 WP_070529829.1 2504494..2505987(+) (comM) [Jeongeupia sp. USM3]
ATGTCGATTGCCCTGATCCACAGCCGTGCGCTGCTCGGCCTTGCTGCGCAGCCGGTCACCGTCGAAGTCCACCTCGCCAA
CGGCTTGCCGGCGTGCACCCTGGTCGGCCTGCCCGACGCCGAGGTCCGCGAGGCGCGCGAGCGCGTGCGTGCGGCCCTGA
GCGTCGCCGGTTTCGAATTTCCGGCGCGGCGGATCACCGTCAACCTGGCGCCGGCCGACCTGCCGAAGTCGTCGGGCCAG
TTCGACCTGCCGATCGCGATCGGCCTGCTCGCCGCCAGCGGGCAGATCCCGGCCGAGCGGCTGGCCGGTTACGAGTTCGC
CGGCGAACTCGGCCTGGCCGGCGACCTGCGGCCGGTGCGCGGCGCGCTGGCGCTGGCCCGTGCGGCGGCGCAGGCCGGGC
GGACGCTGATCGTACCGGCGGGCTGCGCGGGCGAGGCCGCGCTGTATCCGGGGGCGACCGTGCTCGCCGCCGAACACCTG
CTGCAGGTGTGCCGCCATTTCGCGACCGGCGAGGCGCTGGCGCCGGCCGTCGCCGTGCAGGCCGTTGCCGCCGAGCCACA
GCCCGACCTGGTCGACGTCCGCGGCCAGGTGCAGGCGCGCCGCGCGCTCGAGATCGCCGCGGCCGGCCGGCATTCGCTGC
TGCTGGTCGGCCCGCCCGGTACCGGCAAGTCGATGCTGGCGCAGCGCCTGCCCGGCCTGCTGCCGGCCTTGGACGCCGAC
GAGGCGATCGACATCGCCGCGGTGCAATCGCTGTCGCGGTCGGGCTTCGACGTCCGCCGTTTCGGGCTGAGGCCGTTCCG
CAGCCCGCACCACACTTCGTCGCCGGTGGCGCTGGTCGGCGGCGGCAGCGTGCCGCAGCCCGGCGAAATCTCGCTGGCGC
ACCACGGCGTGCTGTTCATGGACGAACTGCCCGAGTTCGACCGCAAGGTGCTCGAGGTGCTGCGCGAACCGCTCGAAACC
GGCGAGGTCCACATCGCCCGGGCCGCGCATTCGGCGTGTTTTCCGGCGCGCTTCCAGCTCGTTGCGGCGATGAACCCGTG
CCCTTGCGGCTATCTGGGCCATCCGCAGAAGGCGTGCCGCTGCACCCCGGAACAGCTGGCGCGCTACCGCGGCCGGCTGT
CCGGGCCGCTGCTGGACCGGATCGACCTGATCGTCGAGGTGCCGGCGCTGCCCGACACGGCCTTGCTGGCGGCGCCCGAC
GGCGAGGCCAGCGAGGTGGTGCGCGGCCGTACCGATCGCGCCTACCGGCGCGCGGCGGCCCGGCAGGGCAAGGCGAATGC
GGCGCTGGCCGGCAAGGACATCGACGTCCATTGCGCGATGGACGAGGCGGGCCGCGCGATGCTGCAGGCGGCGCTGAGCC
GGCTCAAGCTGTCGGCGCGGGCCTTCCACCGGGTGCTGCGGGTGGCGCGGACGATCGCCGACCTCGCCGGTGCCGAGACA
ATCGCGGCGGCACACATTGCCGAGGCGGTGCAGTACCGGCGCGGCTTAGGATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D9BFB1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.131

99.598

0.529
  comM Glaesserella parasuis strain SC1401

52.705

100

0.529
  comM Vibrio campbellii strain DS40M4

51.919

99.598

0.517
  comM Haemophilus influenzae Rd KW20

50.902

100

0.511
  comM Legionella pneumophila str. Paris

47.047

100

0.481
  comM Legionella pneumophila strain ERS1305867

47.047

100

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.8

100

0.441

Multiple sequence alignment