Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   BKM67_RS08225 Genome accession   NZ_CP017667
Coordinates   1676886..1677935 (-) Length   349 a.a.
NCBI ID   WP_014638484.1    Uniprot ID   -
Organism   Streptococcus suis strain 1081     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1671886..1682935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM67_RS08205 (BKM67_08025) trpB 1672418..1673593 (-) 1176 WP_044684674.1 tryptophan synthase subunit beta -
  BKM67_RS08210 (BKM67_08030) - 1674412..1674939 (-) 528 WP_105120065.1 VanZ family protein -
  BKM67_RS08215 (BKM67_08035) rlmN 1674936..1676048 (-) 1113 WP_012028433.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  BKM67_RS08220 (BKM67_08040) - 1676057..1676698 (-) 642 WP_024399656.1 YutD-like domain-containing protein -
  BKM67_RS08225 (BKM67_08045) sepM 1676886..1677935 (-) 1050 WP_014638484.1 SepM family pheromone-processing serine protease Regulator
  BKM67_RS08230 (BKM67_08050) coaD 1677922..1678410 (-) 489 WP_002939048.1 pantetheine-phosphate adenylyltransferase -
  BKM67_RS08235 (BKM67_08055) rsmD 1678400..1678939 (-) 540 WP_029186344.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BKM67_RS08240 (BKM67_08060) - 1679246..1679968 (-) 723 WP_105119195.1 serine protease -
  BKM67_RS08245 (BKM67_08065) - 1680025..1680411 (-) 387 WP_004194735.1 rhodanese-like domain-containing protein -
  BKM67_RS08250 (BKM67_08070) - 1680411..1680629 (-) 219 WP_004194736.1 YqgQ family protein -
  BKM67_RS08255 (BKM67_08075) - 1680954..1681553 (-) 600 WP_105184117.1 response regulator transcription factor -
  BKM67_RS08260 (BKM67_08080) - 1681550..1682644 (-) 1095 WP_162636974.1 histidine kinase -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 37719.70 Da        Isoelectric Point: 4.4261

>NTDB_id=201370 BKM67_RS08225 WP_014638484.1 1676886..1677935(-) (sepM) [Streptococcus suis strain 1081]
MKKNRKLTLIASIVLGTLLIWFAVFVRLPYYLESPGGAADIRQVLTVNNQIDQEDGSYNFTYVSVQQATALQLFAAQFDP
YTTVRSSEEMTGGADNEEYFRIAQFYMETSQNMAKYQGLTLAGKEVNLDFFGVYVLALADDSTFKKVLNIADTVVSINGK
TFESSPDLIKYVSGLELGSDVTVGYISAGQEKSADGKIIKLSNGKNGIGITLVDHTEVQSSIPIDFQTGDIGGPSAGLMF
TLAIYTQLAEPDLRDGRIIAGTGTIEQDGKVGDIGGADKKVISAAKSGASIFFVPNNPVDVEVLKEDPKAKTNYEEAKEA
AEKAGLDIEVVPVKTVQEAIDYLKKTKGE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=201370 BKM67_RS08225 WP_014638484.1 1676886..1677935(-) (sepM) [Streptococcus suis strain 1081]
ATGAAGAAAAATAGGAAGTTAACCTTAATTGCATCTATTGTTTTAGGAACTCTTTTGATTTGGTTTGCCGTTTTTGTTCG
TCTGCCTTATTATCTGGAAAGTCCAGGTGGAGCTGCCGATATTCGTCAGGTACTAACGGTGAACAATCAAATAGACCAAG
AGGATGGCTCTTACAACTTCACCTATGTATCAGTCCAACAAGCTACAGCTTTACAACTATTCGCTGCTCAGTTTGATCCC
TATACGACAGTTCGTTCCTCTGAAGAGATGACAGGAGGGGCCGACAATGAAGAGTATTTCCGTATAGCACAGTTTTACAT
GGAGACATCGCAAAATATGGCGAAGTACCAAGGTTTGACCTTGGCAGGAAAAGAAGTCAATCTTGATTTCTTTGGTGTCT
ATGTACTTGCCTTGGCGGATGATTCGACCTTTAAAAAAGTTCTTAATATTGCCGACACTGTTGTGAGTATCAATGGAAAA
ACATTTGAGTCTTCTCCTGATTTGATTAAATATGTGAGTGGCTTGGAACTTGGAAGTGATGTAACAGTTGGTTATATTAG
CGCTGGTCAGGAGAAATCTGCGGACGGTAAGATTATCAAATTGTCTAATGGCAAAAACGGAATCGGCATCACTCTCGTAG
ATCATACAGAGGTTCAAAGTTCGATTCCGATTGATTTCCAAACGGGAGATATTGGTGGTCCAAGTGCTGGTCTGATGTTT
ACACTTGCCATCTATACTCAACTCGCAGAGCCTGACTTACGTGATGGTCGGATTATTGCTGGTACGGGGACAATCGAGCA
GGATGGAAAAGTAGGTGACATTGGTGGGGCTGATAAGAAGGTTATTTCGGCAGCTAAGTCAGGTGCAAGTATCTTTTTCG
TACCAAACAATCCAGTTGATGTGGAAGTTTTGAAGGAAGATCCAAAGGCTAAAACCAACTATGAAGAAGCTAAGGAAGCT
GCGGAGAAAGCAGGATTGGATATTGAGGTAGTTCCTGTGAAAACGGTTCAAGAGGCTATTGATTATTTGAAGAAAACAAA
GGGCGAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

60.807

99.427

0.605


Multiple sequence alignment