Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   BKM67_RS08320 Genome accession   NZ_CP017667
Coordinates   1691120..1692895 (-) Length   591 a.a.
NCBI ID   WP_161950939.1    Uniprot ID   A0AAD0PAE1
Organism   Streptococcus suis strain 1081     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1686120..1697895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM67_RS08290 (BKM67_08110) - 1686234..1686656 (+) 423 WP_012027608.1 membrane protein -
  BKM67_RS08295 (BKM67_08115) - 1686646..1688445 (+) 1800 WP_105119193.1 acyltransferase family protein -
  BKM67_RS08300 (BKM67_08120) - 1688638..1689291 (-) 654 WP_105119192.1 phosphatase PAP2 family protein -
  BKM67_RS08305 (BKM67_08125) - 1689316..1689873 (-) 558 WP_044762081.1 ECF transporter S component -
  BKM67_RS08310 (BKM67_08130) - 1690198..1690743 (-) 546 WP_002939238.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  BKM67_RS08320 (BKM67_08140) oppA 1691120..1692895 (-) 1776 WP_161950939.1 oligopeptide ABC transporter substrate-binding protein Regulator
  BKM67_RS08325 (BKM67_08145) yidD 1693536..1693775 (-) 240 WP_014736240.1 membrane protein insertion efficiency factor YidD -
  BKM67_RS08330 (BKM67_08150) - 1693775..1694506 (-) 732 WP_105184113.1 pseudouridine synthase -
  BKM67_RS08335 (BKM67_08155) scpB 1694496..1695065 (-) 570 WP_002939233.1 SMC-Scp complex subunit ScpB -
  BKM67_RS08340 (BKM67_08160) - 1695049..1695768 (-) 720 WP_002942755.1 segregation/condensation protein A -
  BKM67_RS08345 (BKM67_08165) xerD 1695768..1696499 (-) 732 WP_024400981.1 site-specific tyrosine recombinase XerD -
  BKM67_RS08350 (BKM67_08170) cbpB 1696496..1696954 (-) 459 WP_012027618.1 cyclic-di-AMP-binding protein CbpB -
  BKM67_RS08355 (BKM67_08175) - 1696951..1697478 (-) 528 WP_012027619.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65412.09 Da        Isoelectric Point: 4.2458

>NTDB_id=201371 BKM67_RS08320 WP_161950939.1 1691120..1692895(-) (oppA) [Streptococcus suis strain 1081]
MKRMKNIALTGIGLLSIAALTACQTKEKTSDVALTFNSEVTNEGQTIEGGSIKYALVASAPSTGILIDELSQTAVDSTFA
DMVDISMFGYDAARKLDDSGLAKAEFDVDAKTVTVSLTGKDYKWSDGQGFTIDDYIFTIEQLASPDYTGVRADTTYTNII
GFEEFQAGTASEISGVKKVDDYTVVLSVKDMSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVK
EIVNGESVTYVPNEYYFKGKVKLDSYRIDIVSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFN
LGKYDETSGKNVTNPNAKMNNVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYDPEKAKKLLD
EAGYKDVDGDGMREDADGKPLTISVAAQKSTETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESIAANDEGIDVYL
AAWIAGLDPDPTSLWGPEAMYNYTRFVSDENTALLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNK
RVKYYDVYIGSDSKSGHENLELTAEKGIAAE

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=201371 BKM67_RS08320 WP_161950939.1 1691120..1692895(-) (oppA) [Streptococcus suis strain 1081]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAGCGTTAACAGCTTGTCAAACTAAAGA
AAAGACGAGCGATGTTGCTCTGACATTTAACTCAGAAGTGACAAACGAAGGACAAACTATCGAAGGCGGGAGTATCAAAT
ATGCCTTGGTAGCTTCGGCACCTTCGACCGGTATCTTAATTGATGAATTATCGCAAACGGCGGTAGACTCAACCTTTGCA
GACATGGTTGATATTTCTATGTTTGGATATGATGCAGCTCGTAAGTTAGACGATTCAGGTCTTGCTAAGGCAGAGTTTGA
TGTAGACGCAAAGACAGTTACCGTTAGTTTGACAGGCAAGGACTATAAGTGGTCCGATGGGCAAGGCTTCACCATCGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGACACTACCTATACAAATATCATT
GGTTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGCGTTAAGAAGGTTGATGACTATACGGTAGTTCTCTC
AGTGAAAGACATGTCTCCATCCATGATGTATGCTGGTGGGGGAGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAG
ACATTGCAGTCAAAGATTGGGAATCAAGTGAGTATTCTCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTCAATGGCGAGTCGGTGACCTATGTACCAAATGAGTACTACTTTAAAGGGAAAGTCAAGCTAGATAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGACC
AGTACGAATCTTATAAGGACTTATCAAATATTACTTTGCTAGGTAGTCTGGATGGTATTTACAATTATATTGGCTTCAAT
CTTGGTAAGTACGATGAGACCAGCGGTAAAAATGTGACCAATCCTAATGCTAAGATGAATAATGTTAAATTGCGTCAAGC
AATGGGATATGCGTTGGACAATGCGGTGATTGGAGAGAAATTATATAACGGCTTGTATCACCCGACAAACTCACTAATTA
TCTCTTTCTTTGGAGATGTTCACGATTCAGAACTAGCTGGCTATAGTTATGATCCTGAAAAGGCTAAGAAACTTCTCGAT
GAGGCAGGATATAAAGACGTTGATGGAGACGGTATGCGTGAAGATGCTGATGGAAAACCACTTACCATCAGTGTTGCAGC
ACAGAAATCAACCGAAACGCAAGAAACCATGGTACAGCAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAAC
TCTATACAGGAAGAACCATTGAGTACAATACTTTCTATGAATCAATTGCTGCCAATGATGAGGGGATTGATGTCTATCTT
GCTGCTTGGATTGCCGGCCTAGATCCAGACCCAACATCATTGTGGGGACCTGAAGCTATGTACAACTATACTCGCTTCGT
TTCAGATGAAAACACAGCACTTTTAAATAAAATTACCTCTGCTGAGTCATTTGACGAACAGAAAAATATTGAAAACTACA
AAGCTTGGCAAGAATATGCCTTCGAGCAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAA
CGCGTTAAATATTACGACGTTTATATCGGTTCGGACAGCAAATCAGGCCATGAAAATCTTGAGTTGACTGCGGAAAAAGG
GATTGCAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(100-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

65.488

100

0.658

Multiple sequence alignment