Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   BKM67_RS00775 Genome accession   NZ_CP017667
Coordinates   124014..124307 (+) Length   97 a.a.
NCBI ID   WP_105178942.1    Uniprot ID   A0AAD0KV01
Organism   Streptococcus suis strain 1081     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 119014..129307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM67_RS00745 (BKM67_00740) - 120034..120408 (+) 375 WP_024385120.1 DUF1033 family protein -
  BKM67_RS00750 (BKM67_00745) - 120436..121386 (-) 951 WP_105183744.1 S66 peptidase family protein -
  BKM67_RS00755 (BKM67_00750) comYA 121472..122422 (+) 951 WP_024412239.1 competence type IV pilus ATPase ComGA Machinery gene
  BKM67_RS00760 (BKM67_00755) comYB 122334..123371 (+) 1038 WP_238145568.1 competence type IV pilus assembly protein ComGB Machinery gene
  BKM67_RS00765 (BKM67_00760) comYC 123373..123654 (+) 282 WP_024385124.1 competence type IV pilus major pilin ComGC Machinery gene
  BKM67_RS00770 (BKM67_00765) comGD 123635..124042 (+) 408 WP_015646273.1 competence type IV pilus minor pilin ComGD -
  BKM67_RS00775 (BKM67_00770) comYE 124014..124307 (+) 294 WP_105178942.1 competence type IV pilus minor pilin ComGE Machinery gene
  BKM67_RS00780 (BKM67_00775) comGF/cglF 124294..124728 (+) 435 WP_105178941.1 competence type IV pilus minor pilin ComGF Machinery gene
  BKM67_RS00785 (BKM67_00780) comGG 124706..125119 (+) 414 WP_105183746.1 competence type IV pilus minor pilin ComGG -
  BKM67_RS00790 (BKM67_00785) comYH 125169..126122 (+) 954 WP_105183747.1 class I SAM-dependent methyltransferase Machinery gene
  BKM67_RS00795 (BKM67_00790) - 126172..127359 (+) 1188 WP_105183748.1 acetate kinase -
  BKM67_RS00800 (BKM67_00795) - 127673..128224 (+) 552 WP_074391332.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10861.72 Da        Isoelectric Point: 8.0134

>NTDB_id=201339 BKM67_RS00775 WP_105178942.1 124014..124307(+) (comYE) [Streptococcus suis strain 1081]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQDWELEQQEVLNLAQMAVQTEQDNLALNGVTVQVQRTAD
KMIVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=201339 BKM67_RS00775 WP_105178942.1 124014..124307(+) (comYE) [Streptococcus suis strain 1081]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACCCTAGTGACCAT
TTGCAGTTTGATTTTATCAGCTGTGGATGCAGGTCGTAGGCGACAGGATTGGGAATTGGAACAACAGGAGGTTCTCAATC
TAGCACAGATGGCTGTTCAGACCGAGCAAGATAACCTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACGAACAGCAGAT
AAGATGATTGTTTTCCACGAGGGAAAGGAGGTTCTATCAGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

53.608

100

0.536
  comYE Streptococcus mutans UA159

53.608

100

0.536
  comGE/cglE Streptococcus pneumoniae Rx1

39.13

94.845

0.371
  comGE/cglE Streptococcus pneumoniae D39

39.13

94.845

0.371
  comGE/cglE Streptococcus pneumoniae R6

39.13

94.845

0.371
  comGE/cglE Streptococcus pneumoniae TIGR4

39.13

94.845

0.371
  comGE/cglE Streptococcus mitis SK321

38.043

94.845

0.361
  comGE/cglE Streptococcus mitis NCTC 12261

38.043

94.845

0.361

Multiple sequence alignment