Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BJP61_RS00095 Genome accession   NZ_CP017662
Coordinates   21844..23364 (+) Length   506 a.a.
NCBI ID   WP_038865883.1    Uniprot ID   -
Organism   Cronobacter sp. JZ38     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 16844..28364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJP61_RS00075 - 18403..19332 (-) 930 WP_038865879.1 branched-chain amino acid transaminase -
  BJP61_RS00080 ilvM 19353..19610 (-) 258 WP_004387277.1 acetolactate synthase 2 small subunit -
  BJP61_RS00085 ilvG 19607..21253 (-) 1647 WP_171997509.1 acetolactate synthase 2 catalytic subunit -
  BJP61_RS00090 ilvL 21392..21490 (-) 99 WP_071601137.1 ilv operon leader peptide -
  BJP61_RS00095 comM 21844..23364 (+) 1521 WP_038865883.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BJP61_RS00100 - 23437..23775 (-) 339 WP_038865886.1 DUF413 domain-containing protein -
  BJP61_RS00105 hdfR 23895..24716 (+) 822 WP_038865888.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54798.00 Da        Isoelectric Point: 8.0502

>NTDB_id=201256 BJP61_RS00095 WP_038865883.1 21844..23364(+) (comM) [Cronobacter sp. JZ38]
MSLSVIHTRAALGVKAPLVTVEVHISAGLPGLTIVGLPETTVKEARDRVRSALINSGYDFPARKITINLAPADLPKEGGR
YDLPIAIALLAASEQLCASQLGEYEFVGELALTGALRGVPGAISAAMEALGCNRKIIVAHDNAPEVGLINKEGCLVAHHL
QEVCAFLEGKTTLQPAEPSEFNFKQPAGDLSEVIGQSQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGSHNRCSPEQTLRYLGRLSGPFLDRFDISLEVPLPPPGMLSRSAQVG
ESSGQVRERVIQTRERQLARQGKLNATLDNGEIRQFCTLSTEDARWLEAALIKLGLSVRAWQRLLKVARTIADSAKEERI
GREHLQEALSYRAIDRMLAHLQNMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=201256 BJP61_RS00095 WP_038865883.1 21844..23364(+) (comM) [Cronobacter sp. JZ38]
ATGTCGCTATCTGTTATCCATACCCGCGCTGCGCTTGGAGTAAAAGCGCCGCTCGTTACGGTCGAAGTGCATATCAGCGC
CGGATTACCCGGCCTGACAATTGTTGGCCTGCCGGAGACGACAGTTAAGGAAGCCAGAGACCGCGTACGTAGCGCGCTTA
TCAATAGCGGTTATGATTTTCCTGCCAGGAAGATAACGATTAACCTGGCGCCTGCCGATTTACCGAAGGAAGGGGGGCGG
TATGATTTGCCGATTGCGATTGCGCTTCTCGCAGCTTCTGAACAGCTATGCGCGTCACAGCTAGGAGAGTATGAGTTTGT
CGGTGAACTGGCCCTCACAGGCGCGCTGCGGGGGGTGCCTGGCGCGATCTCAGCAGCCATGGAGGCTCTCGGCTGTAACA
GGAAAATTATCGTCGCGCACGATAACGCACCGGAAGTGGGATTGATTAATAAAGAAGGTTGCCTTGTCGCGCATCATCTG
CAAGAGGTGTGTGCCTTTCTGGAAGGCAAAACGACGCTGCAACCAGCCGAGCCATCCGAATTTAATTTTAAGCAACCTGC
GGGCGATCTTAGTGAAGTTATTGGACAATCACAGGGGAAACGCGCGCTGGAATTAACAGCCGCGGGTGGCCATAACTTAT
TGTTTATCGGGCCTCCCGGCACCGGTAAAACAATGCTAGCCAGTAGACTCAACGGATTACTACCGCCTCTGAGCGACCAG
GAGGCGCTGGAGAGCGCGGCAATCCTTAGCCTGGTCAACCCCGTCTCTTTACATCACCAGTGGCGTCAGCGGCCTTTCAG
GGCCCCTCACCATAGTGCGTCGCTGAATGCGATGGTAGGGGGAGGCGCTATACCTGCACCCGGAGAAATTTCACTTGCCC
ATAACGGTGTACTTTTTCTTGATGAGTTACCTGAATTTGAACGTCGTGTACTGGACGCATTGCGCGAGCCTATTGAATCC
GGGCAAATTCATCTTTCAAGAACCCGGGCAAAGCTCACTTATCCGGCGCGCTTTCAGCTTATTGCGGCGATGAATCCCAG
CCCGACCGGCCATTATAAAGGAAGCCATAACCGCTGCTCACCAGAACAGACACTACGCTATCTCGGGCGTCTATCAGGGC
CTTTCCTCGACCGGTTTGATATCTCCCTGGAGGTTCCATTGCCGCCGCCAGGTATGCTAAGCCGGTCAGCGCAAGTGGGT
GAAAGTAGCGGGCAGGTACGTGAGCGCGTTATCCAAACCCGTGAAAGGCAGCTTGCACGGCAGGGTAAGCTCAACGCGAC
ACTGGATAACGGAGAGATACGTCAGTTTTGTACGCTCAGCACGGAAGATGCGCGGTGGCTGGAAGCGGCGTTAATCAAGC
TTGGGTTGTCTGTACGCGCCTGGCAGCGTCTATTGAAAGTGGCGAGAACCATTGCAGACAGTGCAAAAGAAGAGAGAATT
GGCCGGGAGCACCTACAGGAGGCGCTGAGTTACCGCGCCATAGACAGGATGCTGGCCCATTTGCAAAACATGATGGCATA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.707

100

0.611
  comM Glaesserella parasuis strain SC1401

60.355

100

0.605
  comM Vibrio cholerae strain A1552

60.04

99.407

0.597
  comM Vibrio campbellii strain DS40M4

58.765

99.209

0.583
  comM Legionella pneumophila str. Paris

48.387

98.024

0.474
  comM Legionella pneumophila strain ERS1305867

48.387

98.024

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.811

100

0.441

Multiple sequence alignment