Detailed information NTG0020110

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SSU05_0050
• Genome accession: CP000407
• Coordinates: 52784..53785 (+)
• Length: 333 a.a.
• NCBI ID: ABP89022.1
• Uniprot ID: -
• Organism: Streptococcus suis 05ZYH33
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 47784..58785

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSU05_0042	-	47839..48417 (+)	579	ABP89015.1	Predicted metal-dependent membrane protease	-
SSU05_0043	-	48039..48134 (+)	96	ABP89014.1	hypothetical protein	-
SSU05_0044	-	48378..48860 (+)	483	ABP89016.1	hypothetical protein	-
SSU05_0045	-	48853..49725 (+)	873	ABP89017.1	ABC-type multidrug transport system, ATPase component	-
SSU05_0046	-	49725..50498 (+)	774	ABP89018.1	ABC-type sugar transport system, permease component	-
SSU05_0047	-	50501..50983 (+)	483	ABP89019.1	ABC-type multidrug transport system, ATPase and permease component	-
SSU05_0048	-	50991..52214 (+)	1224	ABP89020.1	ABC-type multidrug transport system, ATPase and permease component	-
SSU05_0049	-	52316..52489 (+)	174	ABP89021.1	hypothetical protein	-
SSU05_0050	ruvB	52784..53785 (+)	1002	ABP89022.1	Holliday junction resolvasome, helicase subunit	Machinery gene
SSU05_0051	-	53785..54531 (+)	747	ABP89023.1	hypothetical protein	-
SSU05_0052	-	54533..55168 (+)	636	ABP89024.1	Predicted phosphatase	-
SSU05_0053	comR	55400..56314 (+)	915	ABP89025.1	Predicted transcriptional regulator	Regulator
SSU05_0054	-	56719..57882 (+)	1164	ABP89026.1	Transposase and inactivated derivative	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37613.12 Da
• Isoelectric Point: 4.4673

>NTDB_id=20110 SSU05_0050 ABP89022.1 52784..53785(+) (ruvB) [Streptococcus suis 05ZYH33]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDSITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=20110 SSU05_0050 ABP89022.1 52784..53785(+) (ruvB) [Streptococcus suis 05ZYH33]
ATGACAAATCGAATTTTAGATATGGAACAAATGCAGGACGAGGAATATGTCGAGCGTACCCTGCGTCCGCAGAAATTAAA
CGAATACATCGGTCAGGACAAGGTTAAGGACCAGCTCAAAATCTTTATCGAGGCAGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTGTTTGGACCTCCAGGTTTGGGGAAGACCACCATGGCCTTTGTCATCGCCAACGAACTGGGCGTTAAT
ATCAAGCAGACTAGTGGTCCTGTTATTGAAAAAGCAGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAGATTCTCTACTCAGCCATGGAAGACTTCTACATCG
ACATCATGATTGGGGCTGGGGAGGCCAGTCGCTCCGTGCATTTGGAGTTGCCGCCTTTTACCCTGATTGGAGCGACCACT
CGTGCGGGTATGCTGTCCAATCCCCTGCGGGCCCGATTTGGGATTACCGGTCACATGGAGTATTACGAACTGGCTGATTT
GACGGAGATTGTCGAGCGGACGGCGGATATCTTTGACATGGAGATTACTCATGAAGCTGCTATTGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCCAACCGTCTGCTCAAGCGGGTGCGGGATTTCGCACAGATTATGGGCGACGGCCTGATT
GACGATAGCATTACGGATAAGGCCCTGACTATGCTGGATGTGGACCGAGAGGGGCTGGACTATGTGGACCAGAAGATTCT
CCGCACCATGATTGAGATGTACGGTGGCGGTCCCGTCGGCCTCAACACCCTGTCGGTCAATATTGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAACCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACGCGGACAGGGCGGGTTGCGACAGCC
AAGGCTTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.332	99.399	0.898
ruvB	Streptococcus pneumoniae R6	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae D39	90.03	99.399	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.589	97.898	0.574
ruvB	Helicobacter pylori 26695	51.064	98.799	0.505
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474