Detailed information    

insolico Bioinformatically predicted

Overview

Name   mecA   Type   Regulator
Locus tag   SSU05_1878 Genome accession   CP000407
Coordinates   1776613..1777350 (-) Length   245 a.a.
NCBI ID   ABP90844.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 1771613..1782350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_1875 - 1772839..1774170 (-) 1332 ABP90841.1 ABC-type transport system involved in Fe-S cluster assembly, permease component -
  SSU05_1876 - 1774118..1774930 (-) 813 ABP90842.1 ABC-type transport system involved in Fe-S cluster assembly, ATPase component -
  SSU05_1877 - 1775444..1776616 (-) 1173 ABP90843.1 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase -
  SSU05_1878 mecA 1776613..1777350 (-) 738 ABP90844.1 Negative regulator of genetic competence, sporulation and motility Regulator
  SSU05_1879 - 1777463..1778299 (-) 837 ABP90845.1 Uncharacterized bacitracin resistance protein -
  SSU05_1880 - 1778426..1778785 (+) 360 ABP90846.1 Unknown protein -
  SSU05_1881 - 1778850..1779743 (+) 894 ABP90847.1 ABC-type amino acid transport/signal transduction system, periplasmic component/domain -
  SSU05_1882 - 1780199..1780732 (+) 534 ABP90848.1 Amino acid transport ATP-binding protein -
  SSU05_1883 - 1780858..1781067 (-) 210 ABP90849.1 hypothetical protein -
  SSU05_1884 - 1781151..1782053 (-) 903 ABP90850.1 Membrane protease subunit -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28573.21 Da        Isoelectric Point: 4.0345

>NTDB_id=20110 SSU05_1878 ABP90844.1 1776613..1777350(-) (mecA) [Streptococcus suis 05ZYH33]
MNEVVMKVKQISDSTLKITIKLDDLEERGMELSDFLIPQEKTEEFFYTVLDELDLPMTFRESGMLSFRVTPKPDRVDIFV
TKSDLDQNLNFDEFTDLSELGDVASMTPDEFFKSLEQTVREKSAPDATAVRHLEEVEQEEEADEEEQERYIYYILEFPTI
EDLFTFVGTVDYPVEESELYKMDGHYYLTVLINVENRSKQYPGYILSRMLEFTNDTKLTRPALQEHGTLMLPLAAIEELR
KVPTV

Nucleotide


Download         Length: 738 bp        

>NTDB_id=20110 SSU05_1878 ABP90844.1 1776613..1777350(-) (mecA) [Streptococcus suis 05ZYH33]
ATGAATGAGGTAGTTATGAAAGTAAAGCAAATTAGTGATTCAACCTTGAAAATCACTATAAAATTAGATGATTTGGAAGA
GAGAGGAATGGAACTTTCGGACTTTCTCATTCCGCAAGAAAAGACAGAGGAGTTCTTTTACACTGTTTTGGATGAATTGG
ATTTACCAATGACTTTCCGAGAAAGCGGTATGCTGAGTTTTCGTGTGACTCCGAAGCCAGATCGGGTGGACATCTTTGTT
ACCAAATCTGATTTGGATCAGAACTTGAATTTTGATGAATTTACAGATTTGTCGGAACTTGGTGATGTCGCAAGTATGAC
TCCAGATGAGTTTTTCAAGAGTTTGGAGCAAACCGTTCGTGAGAAAAGTGCACCGGATGCAACAGCTGTTCGTCATTTGG
AAGAGGTAGAGCAAGAGGAAGAAGCAGATGAAGAGGAGCAGGAGCGCTATATTTACTATATTTTGGAATTTCCAACGATA
GAGGATCTGTTTACTTTTGTTGGTACGGTTGATTATCCAGTAGAAGAATCGGAATTATATAAAATGGATGGTCACTACTA
CTTGACAGTTCTTATCAATGTAGAAAATCGTTCCAAGCAGTATCCAGGCTACATTCTCTCAAGAATGTTGGAATTTACCA
ATGATACTAAGTTGACCAGACCTGCTTTACAAGAACACGGAACTTTGATGCTTCCGCTTGCGGCAATTGAGGAGCTTAGG
AAGGTTCCGACAGTATGA

Domains

Predicted by InterproScan.

Negative regulator of genetic competence (MecA) (MecA)

(6-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Streptococcus pneumoniae Rx1

52.049

99.592

0.518
  mecA Streptococcus pneumoniae D39

52.049

99.592

0.518
  mecA Streptococcus pneumoniae R6

52.049

99.592

0.518
  mecA Streptococcus pneumoniae TIGR4

52.049

99.592

0.518
  mecA Streptococcus mutans UA159

50.41

99.592

0.502
  mecA Streptococcus thermophilus LMD-9

47.5

97.959

0.465
  mecA Streptococcus thermophilus LMG 18311

47.083

97.959

0.461

Multiple sequence alignment