Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SSU05_1244 Genome accession   CP000407
Coordinates   1186864..1187805 (-) Length   313 a.a.
NCBI ID   ABP90210.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1181864..1192805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_1238 - 1181968..1183014 (-) 1047 ABP90204.1 Parvulin-like peptidyl-prolyl isomerase -
  SSU05_1239 - 1183030..1183791 (-) 762 ABP90205.1 Predicted O-methyltransferase -
  SSU05_1240 - 1183824..1183934 (-) 111 ABP90206.1 hypothetical protein -
  SSU05_1241 - 1183921..1184373 (-) 453 ABP90207.1 hypothetical protein -
  SSU05_1242 - 1184389..1184853 (-) 465 ABP90208.1 hypothetical protein -
  SSU05_1243 pepF 1184831..1186633 (-) 1803 ABP90209.1 Oligoendopeptidase F Regulator
  SSU05_1244 coiA 1186864..1187805 (-) 942 ABP90210.1 Competence protein Machinery gene
  SSU05_1245 - 1187869..1189677 (-) 1809 ABP90211.1 Methionyl-tRNA synthetase -
  SSU05_1246 - 1189721..1189873 (-) 153 ABP90212.1 Methionyl-tRNA synthetase -
  SSU05_1247 - 1190029..1190622 (+) 594 ABP90213.1 Predicted membrane protein -
  SSU05_1248 - 1190673..1190768 (-) 96 ABP90214.1 hypothetical protein -
  SSU05_1249 - 1190923..1191960 (+) 1038 ABP90215.1 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36261.73 Da        Isoelectric Point: 7.4147

>NTDB_id=20094 SSU05_1244 ABP90210.1 1186864..1187805(-) (coiA) [Streptococcus suis 05ZYH33]
MLVALDEDGQVFNVLENPAPQGSFSCPGCGGLVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSCLYRWLVNAEQ
VELEKCLTSIGQVADLFVNNSLALEVQCSGLPISRLQLRTQAYSEAGYQVLWLLGKDLWLKERLTNLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLDILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=20094 SSU05_1244 ABP90210.1 1186864..1187805(-) (coiA) [Streptococcus suis 05ZYH33]
ATGTTAGTAGCACTTGATGAAGATGGGCAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGCAGTTTTTCCTGTCC
AGGTTGTGGAGGACTTGTCCGATACAAATCAGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTAACCCTGCGGGACTGCC
ACTATTTTTCCGAGAATGAGTCCGCTCAGCACCTGTCCCTCAAGTCTTGTCTGTACAGGTGGTTAGTCAATGCCGAACAA
GTTGAACTTGAAAAATGCTTGACTAGTATAGGACAGGTCGCTGATTTATTTGTCAATAATAGTCTAGCTTTGGAAGTTCA
ATGTTCCGGTCTGCCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATAGTGAGGCTGGTTATCAGGTTCTTTGGTTGC
TTGGCAAGGATTTGTGGCTCAAGGAACGACTGACCAATTTGCACAAGCAATTTCTCTCTTTTAGTATGAATATGGGGTTT
CACCTCTGGGAATTGGATGATGAGAAGAAGGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGACATCTTGCGTCTGCCATTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTG
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTACCCCCACATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAACCCTAGTTTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.205

99.681

0.53
  coiA Streptococcus pneumoniae TIGR4

51.603

99.681

0.514
  coiA Streptococcus pneumoniae Rx1

51.603

99.681

0.514
  coiA Streptococcus pneumoniae D39

51.603

99.681

0.514
  coiA Streptococcus pneumoniae R6

51.603

99.681

0.514
  coiA Lactococcus lactis subsp. cremoris KW2

42.5

100

0.435

Multiple sequence alignment