Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SDD27957_09930 Genome accession   CM001076
Coordinates   1881132..1883606 (+) Length   824 a.a.
NCBI ID   EFY03577.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1876132..1888606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_09905 - 1878548..1879093 (-) 546 EFY03574.1 colicin V production protein -
  SDD27957_09910 - 1879096..1879404 (-) 309 EFY03575.1 hypothetical protein -
  SDD27957_09925 - 1880479..1881072 (+) 594 EFY03576.1 Signal peptidase I -
  SDD27957_09930 recD/recD2/recDB 1881132..1883606 (+) 2475 EFY03577.1 putative exodeoxyribonuclease V (alpha subunit) Machinery gene
  SDD27957_09935 - 1883667..1884167 (+) 501 EFY03578.1 hypothetical protein -
  SDD27957_09940 - 1884256..1885353 (-) 1098 EFY03579.1 DNA polymerase IV -
  SDD27957_09945 - 1885562..1887889 (+) 2328 EFY03580.1 Putative pyruvate formate-lyase -
  SDD27957_09950 - 1887906..1888436 (+) 531 EFY03581.1 acetyltransferase (GNAT) family protein -

Sequence

Protein


Download         Length: 824 a.a.        Molecular weight: 92107.20 Da        Isoelectric Point: 4.6232

>NTDB_id=20094 SDD27957_09930 EFY03577.1 1881132..1883606(+) (recD/recD2/recDB) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MEHFFTGTVDRIIFENAANFFKILLLAIEDTDSDIDDFEIIITGTMADIIEGDDYTFWGELTQHPKYGQQLKLSRYQKVK
PSSSGLVNYFSSDHFKGIGKKTAEKIIALYGNNTIDHILEDPSKLETISGLSKANRQAFVAKLKLNYGTEQLIAGLVELG
LSNRFAFQAFDKYKEEALDLVKENPYQLVEDLQGFGFKMADALAENLGIESDSPKRFRAALLHCLLEESVSRGDTYVQAR
QLLDFTITLLEDARQVECDPAAVAEQLSELIIEGKIKNSDTKLFDASLYFAEEGIAKNISRLLDTPLSQSFSHDTIQTTV
QAVQEDFAITYDQVQQEAIAKALTSKVFLLTGGPGTGKTTVIRGILQAYANLHQIDLDKKDLPILLAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMEDYLDCDLLIVDEFSMVDTWLANQLLAAISSTTQVIIVGDSDQLPSVGPGQVLSDFL
KVNSLPQIALQKIFRQSQESTIVDLADQMRRGILAADFRDKKADRSYFEAQASFIPDMIQKIVLSAIKSGIPAEEIQILA
PMYKGQAGINHLNQLMQNLLNPLEGQTEFLFNDTHFRKGDKVLHLVNDAQLNVFNGDIGYIKDLIPAKYTESKQDELILD
FDGSEVTYPRNEWLKLTLAYAMSIHKSQGSEFQVVILPITRQSGRLLQRNLIYTAITRSKSKLIMLGEIAAFDYAIKNEG
DKRQTYLIERFQEQSDLVSSQPNQELKSKEQTSLFSNTATLEDDSQKSSSQPTNSNPTENSQSDNHNLRLTPENYSTIDP
MIGLTDSDVALFFQKKPTKTDILD

Nucleotide


Download         Length: 2475 bp        

>NTDB_id=20094 SDD27957_09930 EFY03577.1 1881132..1883606(+) (recD/recD2/recDB) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGGAACACTTTTTTACAGGTACTGTTGACCGCATTATCTTTGAAAATGCAGCTAATTTTTTTAAAATTCTCCTCCTTGC
TATCGAAGACACAGATAGTGATATTGACGACTTTGAAATCATTATCACAGGGACGATGGCTGACATTATCGAAGGAGATG
ACTACACCTTTTGGGGAGAATTGACCCAGCACCCTAAATATGGACAGCAACTCAAACTAAGCCGTTACCAAAAAGTCAAA
CCTAGTTCATCTGGTTTGGTTAATTATTTCTCTAGCGACCATTTTAAGGGGATTGGAAAGAAAACAGCGGAGAAAATCAT
TGCCCTCTATGGCAATAATACTATTGACCATATTTTAGAAGACCCAAGTAAATTAGAAACTATCTCTGGTCTGTCCAAGG
CTAATCGTCAAGCCTTTGTCGCTAAACTGAAATTGAATTATGGCACAGAGCAACTGATTGCTGGTCTCGTCGAACTCGGC
CTTAGCAACCGTTTTGCCTTTCAAGCGTTTGATAAGTACAAAGAAGAGGCTCTTGACCTTGTTAAAGAAAATCCCTATCA
GTTAGTCGAAGATTTACAAGGTTTTGGGTTTAAGATGGCAGATGCTCTCGCTGAAAACTTAGGGATTGAGAGTGACTCTC
CAAAACGTTTTCGTGCCGCTCTACTGCACTGTCTCTTGGAAGAGTCCGTCAGTCGAGGAGATACTTATGTCCAAGCACGA
CAATTATTAGACTTTACCATCACACTCCTTGAAGATGCACGTCAAGTAGAATGTGACCCTGCTGCTGTGGCTGAACAACT
AAGCGAGTTAATCATAGAGGGCAAAATTAAAAACAGTGACACCAAATTGTTTGATGCTAGCCTTTATTTTGCTGAAGAGG
GGATTGCTAAGAATATCTCTCGTCTCTTAGATACCCCTTTAAGTCAGTCATTTAGTCATGATACCATCCAAACAACCGTC
CAAGCCGTTCAGGAAGACTTTGCTATCACCTATGACCAGGTGCAGCAAGAAGCCATTGCTAAAGCCTTAACCAGCAAGGT
ATTTCTCCTAACAGGTGGTCCCGGAACAGGGAAAACAACTGTTATTCGAGGCATTTTACAGGCTTACGCTAACCTGCATC
AGATTGATTTGGATAAAAAAGACCTTCCTATCTTGTTAGCAGCTCCAACAGGTCGGGCTGCACGTCGTATGAATGAGTTG
ACTGGACTTCCTAGCGCAACCATCCACAGACACTTAGGCCTCAATGGCGACAACGATTACCAAGCCATGGAAGATTATCT
GGACTGCGACTTGCTGATTGTCGATGAATTTTCAATGGTGGATACCTGGCTTGCCAACCAATTGTTAGCAGCGATTAGTT
CTACAACTCAAGTAATTATTGTCGGAGATAGTGACCAGCTTCCTTCGGTTGGACCCGGTCAAGTCCTGTCAGATTTTTTA
AAAGTCAATAGCCTACCCCAAATCGCCTTGCAGAAAATCTTTCGTCAATCCCAAGAATCTACTATTGTAGATTTGGCAGA
CCAGATGCGTCGAGGAATCTTAGCTGCTGACTTTCGTGATAAAAAAGCTGACCGTTCTTATTTTGAAGCCCAAGCCTCTT
TCATCCCGGACATGATTCAAAAAATTGTTCTATCTGCTATTAAAAGTGGCATCCCTGCTGAGGAAATTCAAATTTTAGCG
CCTATGTACAAAGGACAGGCTGGCATCAATCATCTTAACCAATTGATGCAAAACCTCCTCAATCCTTTGGAAGGGCAAAC
GGAATTTCTGTTCAATGATACGCATTTTCGTAAAGGTGATAAAGTCTTGCACTTAGTCAACGATGCTCAGTTGAATGTCT
TTAATGGAGATATTGGTTATATTAAAGATTTGATTCCTGCTAAATATACCGAATCTAAACAAGACGAATTAATCTTAGAT
TTTGACGGTAGCGAGGTAACATATCCTAGAAATGAATGGCTAAAATTAACCCTAGCCTATGCCATGAGCATTCATAAGTC
GCAAGGGAGCGAGTTTCAAGTGGTAATTTTACCCATCACACGCCAAAGCGGCCGACTTTTGCAACGAAATTTGATTTACA
CAGCGATTACTCGATCTAAAAGTAAATTGATTATGCTAGGCGAAATCGCTGCCTTTGATTACGCCATCAAAAATGAAGGA
GATAAGCGCCAAACCTACTTGATTGAACGTTTTCAAGAACAATCCGACTTAGTCTCCTCTCAACCTAACCAAGAGCTAAA
ATCAAAAGAGCAGACCTCCCTTTTTTCTAATACGGCCACCCTTGAGGACGACTCTCAAAAATCTTCCTCTCAACCAACAA
ACTCTAATCCCACTGAAAACTCTCAGTCAGATAATCACAATCTTAGGTTAACACCTGAGAATTATTCGACTATCGATCCG
ATGATAGGGCTTACAGACTCAGATGTTGCCCTCTTTTTCCAGAAAAAACCTACAAAAACGGATATTCTCGATTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

AAA domain (AAA_30)

(331-522)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.308

91.505

0.387

Multiple sequence alignment