Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SSU05_1243 Genome accession   CP000407
Coordinates   1184831..1186633 (-) Length   600 a.a.
NCBI ID   ABP90209.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1179831..1191633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_1237 - 1181215..1181715 (-) 501 ABP90203.1 Uncharacterized conserved protein -
  SSU05_1238 - 1181968..1183014 (-) 1047 ABP90204.1 Parvulin-like peptidyl-prolyl isomerase -
  SSU05_1239 - 1183030..1183791 (-) 762 ABP90205.1 Predicted O-methyltransferase -
  SSU05_1240 - 1183824..1183934 (-) 111 ABP90206.1 hypothetical protein -
  SSU05_1241 - 1183921..1184373 (-) 453 ABP90207.1 hypothetical protein -
  SSU05_1242 - 1184389..1184853 (-) 465 ABP90208.1 hypothetical protein -
  SSU05_1243 pepF 1184831..1186633 (-) 1803 ABP90209.1 Oligoendopeptidase F Regulator
  SSU05_1244 coiA 1186864..1187805 (-) 942 ABP90210.1 Competence protein Machinery gene
  SSU05_1245 - 1187869..1189677 (-) 1809 ABP90211.1 Methionyl-tRNA synthetase -
  SSU05_1246 - 1189721..1189873 (-) 153 ABP90212.1 Methionyl-tRNA synthetase -
  SSU05_1247 - 1190029..1190622 (+) 594 ABP90213.1 Predicted membrane protein -
  SSU05_1248 - 1190673..1190768 (-) 96 ABP90214.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69246.49 Da        Isoelectric Point: 4.5800

>NTDB_id=20093 SSU05_1243 ABP90209.1 1184831..1186633(-) (pepF) [Streptococcus suis 05ZYH33]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFAGHLLDSAKSLLEISETQLSLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAVFSQAFAFYEPEFMGITEEKLEAFKVEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEITDEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=20093 SSU05_1243 ABP90209.1 1184831..1186633(-) (pepF) [Streptococcus suis 05ZYH33]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTAACCACTATTTTCCCAACCGATGAAGCCTGGGA
AGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTACTGGACTCAGCTAAAAGTC
TCTTAGAAATTAGCGAAACGCAACTTAGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGCGAAGGAAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGTCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGGCATTACTGAAGAGAAATTGGAAGCCTTTAAAGTAGAAGAGCCGGCTCTTGTTCAGT
ACAGCCATCAATTTGAAAAACTTTTAGCAGCTAAGGACCATGTCTTGTCACAAGAGGTGGAAGAAGTATTGGCGGCGACC
AGCGAAATTTTCGAATCACCAGCTGAAACCTTCTCAGTCTTGGACAATGCCAGCCTGCGTTTCCCAGAAATCACAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CCTATGAAGCTATGTACGGTACTTATGAGCAGTTCCAGCATACATACGCTAAGACCCTTCAGTCTAATGTCAAGGTCAAT
AACTTGAAAGCTCGTTTGCGGAAGTACGATTCAGCCCGTCACGCATCACTTGCAGCTAATTTCATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCATCGTTACATCAATTTGCGTAAGAAGCTCCTGGGGA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGCACCAAGATTTCTTATGAAGATGCTCTTAAA
AAATGTCAAGAAACCTTGGAAATCTTCGGCGAGGATTATTCGGCTATTGTGAAGGAAGCCTTCGAAAACCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATACTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGACATTCTCTTCATTCCATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGCCATTATTCACTTTTCTTGGCTGAAATTGCTTCAACTACCAACGAAAACCTTCTGACTGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTAAATCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACCCAATTTGCCGAGTTTGAACAAGCTATCTATAAGGCAGACCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAACGAGAAATATTACGGACTTTCTGCCGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAGTATGCGACAGGTTTCGCAGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCCAAAGCAGGTGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAAGCCCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.833

100

0.698

Multiple sequence alignment