Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   SDD27957_09900 Genome accession   CM001076
Coordinates   1876057..1878393 (-) Length   778 a.a.
NCBI ID   EFY03573.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1871057..1883393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_09880 - 1872665..1873462 (-) 798 EFY03569.1 transposase IS861 orfB -
  SDD27957_09885 - 1873498..1874013 (-) 516 EFY03570.1 transposase IS861 orfA -
  SDD27957_09890 - 1874105..1874419 (-) 315 EFY03571.1 thioredoxin -
  SDD27957_09895 - 1874646..1875965 (+) 1320 EFY03572.1 pyridine nucleotide-disulfide oxidoreductase -
  SDD27957_09900 mutS/mutS2 1876057..1878393 (-) 2337 EFY03573.1 DNA mismatch repair protein Machinery gene
  SDD27957_09905 - 1878548..1879093 (-) 546 EFY03574.1 colicin V production protein -
  SDD27957_09910 - 1879096..1879404 (-) 309 EFY03575.1 hypothetical protein -
  SDD27957_09925 - 1880479..1881072 (+) 594 EFY03576.1 Signal peptidase I -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87159.76 Da        Isoelectric Point: 6.7996

>NTDB_id=20093 SDD27957_09900 EFY03573.1 1876057..1878393(-) (mutS/mutS2) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MDKKILEQLEFDKVKEQFRAYLQTEQGNRELDQLEPLNYHEKIKHYFLEIEEMAGIFVEHHHFALGSLSDISASMRRLEL
EADLSIPELLAVKKILQVSAEASRFYVDLENVQLQALKRLFENLELFLSLQGSLQAINDGGFVESFASPELEKIRRSISD
KEHASRNVLQDLLKKQGDYLSESLIASRNGRSVLPVKNTFRNKVAGVVHDISASGNTVYIEPRALVQLNEELTQLQADER
HEVSRVLQTLSDLIRPHSRVLTNNAWILGHLDFVRAKYLYMRDNKATVPAISDDKSLQLLNVRHPLLQEPVANDLHFSKD
LAVIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILADKGSKVAVFSGIFADIGDEQSIEQSLSTFSSHMTHIVAILNQAD
ADSLVLFDELGAGTDPQEGASLAMAILEQLRLTNVKTMATTHYPELKAYGIETPYVENASMEFDSMSLKPTYRFMQGVPG
RSNAFEIARRLGLAEHIVKEAQTMTDTDSDVNRIIEQLERQTLESRKRLDHIREVEQDNLKFNRAVKKLYNEFSQAKDKE
IEKATLEAREIVDLALAESDSILNQLHDKAALKPHEVIEAKGQLKQLVPEKSLSQNKVLKKAKQLRAPRVGDDIIVTAYG
QRGTLVKELKDKKWEAQVGLIKMTLKEDEFSLVKVVEEAQKPKKKAINVVKKAATGGGPRARLDLRGKRYEEAMQELDAF
IDQALLNNMSQVDIIHGIGTGVIREAVTKYLRRNKHVKSFGYAPQNAGGSGCTIANLG

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=20093 SDD27957_09900 EFY03573.1 1876057..1878393(-) (mutS/mutS2) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGGATAAAAAGATTTTAGAACAGTTAGAATTTGATAAGGTCAAAGAACAATTTCGGGCCTACCTGCAGACAGAGCAGGG
GAACCGTGAATTAGACCAACTCGAACCCCTCAATTATCATGAGAAAATCAAACATTACTTTTTAGAAATTGAAGAAATGG
CTGGCATTTTTGTAGAGCATCATCACTTTGCATTGGGCAGTCTGTCTGACATTTCAGCTAGCATGAGACGTTTGGAACTG
GAAGCTGATTTGAGCATTCCCGAATTATTAGCAGTCAAAAAAATACTTCAGGTATCAGCAGAAGCGAGTCGCTTTTATGT
TGATTTGGAAAACGTTCAGCTGCAAGCCTTGAAGCGTTTATTTGAAAATCTGGAGCTTTTCCTTAGCCTTCAAGGCAGTC
TTCAGGCTATTAATGACGGTGGTTTTGTGGAAAGTTTTGCCAGTCCTGAGTTAGAAAAGATTCGTCGTAGCATCTCAGAC
AAAGAACATGCGAGCCGGAATGTCTTACAAGATTTACTCAAAAAGCAAGGGGACTATTTGTCAGAAAGCTTGATTGCTAG
CCGAAACGGGCGTAGTGTCTTACCTGTCAAAAACACCTTCCGTAATAAGGTGGCAGGGGTCGTTCACGATATTTCGGCTT
CAGGAAATACGGTTTATATTGAACCACGAGCTCTTGTTCAACTAAATGAAGAGCTGACGCAGTTACAAGCCGACGAACGC
CATGAAGTGTCACGTGTCCTTCAAACCCTATCAGACCTGATTAGACCTCATAGTCGAGTTCTTACCAATAATGCTTGGAT
TTTGGGGCATCTGGATTTTGTCAGAGCCAAATACCTCTATATGAGAGACAATAAGGCCACGGTCCCGGCTATTTCGGATG
ATAAAAGTTTACAGTTGTTGAATGTGCGCCACCCTCTTTTGCAGGAGCCAGTTGCTAATGATTTGCATTTCTCTAAAGAT
TTGGCTGTTATTGTGATTACTGGTCCGAATACTGGTGGTAAAACCATCATGCTAAAAACGCTAGGTTTAGCCCAGCTAAT
GGCCCAATCGGGTCTGCCTATTCTAGCAGATAAAGGTTCCAAAGTTGCTGTTTTTAGTGGTATTTTTGCTGACATTGGCG
ATGAACAATCCATTGAGCAGAGCTTATCAACTTTCTCTAGCCATATGACTCATATTGTTGCTATTTTGAATCAAGCTGAT
GCAGACAGTTTAGTACTCTTTGATGAGCTGGGGGCAGGAACAGATCCGCAAGAAGGAGCAAGTCTTGCTATGGCAATCTT
GGAGCAGTTACGCTTGACTAATGTCAAAACCATGGCGACTACCCATTACCCTGAACTAAAAGCATATGGCATCGAAACTC
CCTATGTGGAAAATGCCAGTATGGAGTTCGATAGCATGAGTTTAAAACCAACTTACCGCTTTATGCAGGGTGTTCCAGGT
CGTTCAAATGCCTTTGAAATTGCTAGACGACTTGGGTTGGCAGAGCACATTGTCAAAGAAGCTCAAACCATGACGGACAC
CGATAGTGATGTTAACCGTATTATCGAACAGTTAGAGAGACAAACTTTGGAGAGTCGTAAGCGGCTTGACCATATTCGAG
AAGTGGAGCAAGATAACCTCAAATTTAACCGTGCGGTCAAAAAATTGTACAATGAGTTCTCACAGGCCAAAGATAAGGAA
ATTGAAAAAGCTACCCTTGAAGCGCGTGAGATTGTAGACTTAGCTTTAGCAGAAAGTGACAGTATTTTAAACCAGTTGCA
TGACAAAGCTGCACTTAAACCTCACGAAGTTATTGAAGCCAAGGGGCAACTCAAACAGTTAGTGCCAGAAAAGAGTCTCT
CTCAAAACAAGGTCCTAAAGAAAGCGAAGCAATTACGAGCTCCTCGAGTAGGAGACGATATTATTGTAACAGCCTATGGC
CAAAGAGGAACCTTGGTAAAAGAACTCAAAGATAAGAAGTGGGAAGCACAAGTTGGACTGATCAAAATGACCCTCAAAGA
AGATGAATTTAGTCTTGTGAAGGTTGTTGAGGAAGCTCAAAAACCAAAGAAAAAAGCTATCAACGTGGTCAAGAAGGCTG
CTACTGGTGGTGGTCCTCGTGCCCGTCTGGATTTGCGTGGCAAACGGTATGAAGAAGCGATGCAAGAACTAGACGCCTTT
ATTGACCAAGCTCTCTTAAATAACATGAGCCAAGTGGATATTATTCATGGGATTGGCACTGGTGTAATCCGTGAAGCTGT
TACCAAATACCTCAGACGAAACAAACATGTTAAAAGCTTTGGTTATGCTCCACAGAATGCGGGTGGATCAGGGTGTACCA
TTGCGAACTTAGGGTGA

Domains

Predicted by InterProScan.

Smr domain (Smr)

(703-776)

MutS2 and Smr-associated SH3 domain (MSSS)

(630-669)

MutS domain V (MutS_V)

(324-505)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

40.253

100

0.409

Multiple sequence alignment