Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DDI_RS18960 Genome accession   NZ_CP017638
Coordinates   4155735..4157261 (+) Length   508 a.a.
NCBI ID   WP_024107676.1    Uniprot ID   A0AAP2D3I4
Organism   Dickeya dianthicola RNS04.9     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4150735..4162261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDI_RS18935 (DDI_4025) - 4150920..4151846 (-) 927 WP_024107672.1 branched-chain amino acid transaminase -
  DDI_RS18940 (DDI_4026) ilvM 4151871..4152128 (-) 258 WP_024107673.1 acetolactate synthase 2 small subunit -
  DDI_RS18945 (DDI_4027) ilvG 4152146..4153792 (-) 1647 WP_024107674.1 acetolactate synthase 2 catalytic subunit -
  DDI_RS18950 ilvL 4153932..4154030 (-) 99 WP_071526243.1 ilv operon leader peptide -
  DDI_RS18955 (DDI_4029) - 4154172..4155383 (-) 1212 WP_024107675.1 MFS transporter -
  DDI_RS18960 (DDI_4030) comM 4155735..4157261 (+) 1527 WP_024107676.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DDI_RS18965 (DDI_4031) - 4157324..4157662 (-) 339 WP_024107677.1 DUF413 domain-containing protein -
  DDI_RS18970 (DDI_4032) hdfR 4157782..4158606 (+) 825 WP_024107678.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55426.04 Da        Isoelectric Point: 7.3824

>NTDB_id=200868 DDI_RS18960 WP_024107676.1 4155735..4157261(+) (comM) [Dickeya dianthicola RNS04.9]
MTLAVTYTRATIGMQAPEVLIEVHISNGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIAGEKLAQYEFLGELGLSGSLRGVHGAIPAAMEAQKAGRGLILPEDNKMEITLVPHGDALLANHL
LQVCAFLQGETPLLRGNEITPETPAHTPIADLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLPGLLPPLD
DEEALESAAINSLIDIQPSLSQWRNRPFRSPHHTASITALVGGGGLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIVISRTRAKVCYPARFQLVAAMNPSPSGHYQGIHNRMPAQQILRYLNRLSGPFLDRFDLSIEVPLLPPGILRQQTR
IGEDSATVRERVFEARKRQLARIGRINAQMKSDDIACHCRLKSEDAAYLEEVMSKLGLSVRAWHRILKVSRTIADLGGED
QIHRTHLSEALSYRCMDRLLIQLHKSLA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=200868 DDI_RS18960 WP_024107676.1 4155735..4157261(+) (comM) [Dickeya dianthicola RNS04.9]
ATGACACTGGCTGTGACCTATACGCGGGCCACCATCGGTATGCAGGCGCCGGAAGTTTTGATTGAAGTGCATATCAGTAA
TGGCTTGCCTGCGCTGACACTGGTTGGTTTACCGGAAACCACGGTCAAAGAGGCACGAGATCGGGTGCGTAGCGCCCTGA
TCAACTGTGGTTTCACCTTTCCCGCCAAGCGGATTACCGTCAATCTGGCGCCTGCGGACCTGCCGAAAGAAGGGGGACGA
TATGACCTCCCCATCGCCCTGGCCATTCTGGCAGCCTCAGAACAGATTGCCGGCGAGAAACTTGCTCAGTATGAGTTCCT
TGGCGAACTTGGGCTGTCAGGCAGCCTGAGAGGCGTTCATGGCGCGATTCCAGCGGCGATGGAAGCGCAAAAAGCTGGCC
GGGGGCTGATTCTGCCGGAAGACAACAAAATGGAGATTACTCTGGTTCCGCATGGTGATGCGTTACTGGCTAATCACCTG
CTGCAGGTCTGTGCCTTTCTGCAGGGCGAAACGCCGCTGCTGCGTGGCAACGAGATTACGCCTGAAACACCAGCTCATAC
GCCGATAGCTGACCTGAAGGACATCATCGGTCAGGAGCAAGCTAAACGCGCGCTGGAAATTGCGGCGGCGGGTGGACATA
ACCTGCTATTGCTCGGTCCGCCGGGCACCGGCAAAACCATGCTGGCTAGCCGTCTGCCCGGTTTGTTGCCGCCGCTTGAT
GACGAGGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTGATAGATATTCAGCCCAGTCTGTCGCAATGGCGTAACCGGCC
ATTCCGTTCGCCTCACCACACCGCATCCATTACTGCACTGGTCGGCGGCGGCGGATTACCCAAACCTGGCGAGATCTCGC
TGGCACATAATGGTGTGCTGTTTCTGGATGAATTGCCGGAATTTGAACGCCGGGTACTGGACTCACTGCGGGAACCGCTG
GAATCAGGCGAAATTGTGATTTCCCGCACTCGCGCCAAAGTCTGTTATCCCGCTCGCTTTCAGTTGGTGGCCGCCATGAA
TCCCAGCCCATCAGGTCACTATCAGGGCATTCACAACCGTATGCCGGCACAGCAAATCCTGCGCTACCTCAACCGGCTCT
CCGGCCCCTTTTTGGATCGTTTTGATTTATCCATTGAAGTACCATTGCTCCCTCCCGGTATTCTTCGCCAGCAAACACGT
ATTGGCGAGGACAGCGCAACCGTACGGGAGCGGGTATTTGAAGCCAGAAAACGGCAGCTAGCCCGCATCGGCAGAATCAA
CGCACAAATGAAATCGGATGACATCGCCTGTCATTGTCGGTTGAAGAGCGAGGATGCGGCGTATCTGGAAGAGGTGATGA
GCAAATTAGGGCTATCGGTCAGGGCCTGGCACCGGATACTGAAAGTCTCACGCACGATTGCCGATCTGGGAGGAGAAGAT
CAGATTCATCGTACTCATTTGTCGGAAGCACTCAGCTACCGTTGTATGGATCGTCTGCTAATCCAGTTGCACAAGAGCCT
GGCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.636

99.606

0.634
  comM Glaesserella parasuis strain SC1401

63.314

99.803

0.632
  comM Vibrio cholerae strain A1552

62.624

99.016

0.62
  comM Vibrio campbellii strain DS40M4

61.706

99.213

0.612
  comM Legionella pneumophila str. Paris

52.008

98.031

0.51
  comM Legionella pneumophila strain ERS1305867

52.008

98.031

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.548

99.803

0.465

Multiple sequence alignment