Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   SDD27957_08770 Genome accession   CM001076
Coordinates   1680661..1682646 (-) Length   661 a.a.
NCBI ID   EFY03353.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1675661..1687646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_08745 proA 1675670..1676920 (-) 1251 EFY03350.1 gamma-glutamyl phosphate reductase -
  SDD27957_08750 - 1676913..1677734 (-) 822 EFY03351.1 gamma-glutamyl kinase -
  SDD27957_08755 - 1677799..1679427 (-) 1629 EFY03352.1 ABC transporter permease protein -
  SDD27957_08770 recP/tkt 1680661..1682646 (-) 1986 EFY03353.1 transketolase Machinery gene
  SDD27957_08775 - 1682697..1682843 (-) 147 EFY03354.1 hypothetical protein -
  SDD27957_08780 - 1682864..1683508 (-) 645 EFY03355.1 putative translaldolase -
  SDD27957_08785 - 1683630..1685141 (-) 1512 EFY03356.1 trans-acting positive regulator -
  SDD27957_08790 - 1685131..1686471 (-) 1341 EFY03357.1 NADH peroxidase -
  SDD27957_08795 - 1686582..1687283 (-) 702 EFY03358.1 glycerol uptake facilitator protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 71352.11 Da        Isoelectric Point: 4.6481

>NTDB_id=20084 SDD27957_08770 EFY03353.1 1680661..1682646(-) (recP/tkt) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MTFDAIDQLAVNTVRTLSMDAIQAANSGHPGLPMGAAPMAYVLWNHFMNINPKTSRNWSNRDRFILSAGHGSAMLYSLLH
LAGYDLSVEDLKNFRQWGSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTFALNGDG
DLMEGVSQEAASMAGHLKLGKLVLLYDSNDISLDGPTSMSFTEDVKGRFEAYGWQHILVKDGNDLEEIAAAIEAAKAETE
KPTIIEVKTIIGFGAEKQGTSAVHGAPLGAEGIVFAKNAYKWTHQDFEVPTEVTERFAQGLQARGEKAEQAWNDLFAAYQ
AEYPELAAEYQKAFANEAAQVELEAHELGSSMASRVSSQQAIQQISEQVASFWGGSADLSASNNTMVKAETDFQPGHYEG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQSLPTVYVMTHDSIAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRAIGETDRPTMLVLTRQNLPVLEGTKELAEDGLNKGAYILSEAKGDLDGILIATGSEV
KLAMDTQEALEAEGIHVRVVSMPSQNIFDEQSAEYKESILPAAVTKRLAIEAGSSFGWAKYVGLAGKTLTIDTWGASAPG
NRIFEEYGFTVANATELYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=20084 SDD27957_08770 EFY03353.1 1680661..1682646(-) (recP/tkt) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGACATTTGATGCAATTGACCAGTTGGCAGTAAATACTGTCCGCACCCTATCAATGGATGCCATTCAAGCGGCAAATTC
TGGACACCCAGGCCTTCCAATGGGTGCAGCACCTATGGCCTACGTTCTTTGGAATCACTTCATGAACATTAATCCAAAAA
CAAGTCGTAATTGGTCAAACAGAGACCGTTTTATCCTATCAGCGGGACACGGAAGTGCTATGCTTTATAGCTTGTTACAC
TTAGCTGGTTATGATTTATCTGTAGAGGATTTAAAAAACTTCCGTCAATGGGGTTCTAAAACACCAGGTCACCCAGAAGT
TAATCATACCGATGGTGTGGAAGCAACTACAGGACCTCTTGGTCAAGGGATTGCGAATGCTGTTGGTATGGCCATGGCAG
AAGCTCATCTAGCAGCTAAATTTAACAAACCAGGATTTGACATCGTTGATCACTACACATTTGCTTTGAATGGTGACGGT
GACCTTATGGAAGGTGTCAGTCAAGAAGCAGCAAGTATGGCAGGACACTTAAAACTTGGCAAATTGGTCTTGCTTTACGA
TTCAAACGACATCTCTCTTGATGGTCCAACCTCAATGTCCTTCACAGAAGATGTTAAAGGACGTTTCGAAGCTTACGGCT
GGCAACATATCCTTGTTAAAGACGGAAACGATTTAGAAGAAATTGCAGCCGCTATCGAAGCAGCTAAGGCTGAAACTGAG
AAACCAACCATCATAGAAGTCAAAACCATTATTGGTTTTGGTGCTGAAAAACAGGGCACATCAGCTGTTCATGGTGCTCC
TCTTGGGGCAGAAGGTATTGTTTTTGCTAAAAATGCTTACAAATGGACTCACCAAGACTTTGAAGTTCCTACTGAAGTGA
CTGAACGTTTTGCTCAAGGTCTTCAAGCACGTGGTGAAAAAGCAGAACAAGCCTGGAATGACTTGTTTGCAGCCTATCAA
GCAGAATATCCTGAATTGGCAGCAGAATACCAAAAAGCCTTTGCTAACGAGGCTGCTCAAGTAGAACTTGAAGCGCACGA
ACTTGGTAGCTCAATGGCGAGTCGTGTTTCTAGCCAACAAGCCATCCAACAAATCTCAGAACAAGTAGCCTCTTTCTGGG
GTGGGTCAGCAGACCTTTCAGCATCTAACAACACAATGGTTAAGGCTGAAACAGATTTCCAACCAGGTCATTATGAAGGC
CGTAACATCTGGTTTGGCGTTCGTGAATTTGCCATGGCAGCAGCTATGAATGGTATTGCCCTTCACGGTGGAACACGCGT
TTACGGCGGAACCTTCTTTGTCTTCTCAAACTATCTTCTTCCAGCTGTTCGTATGGCAGCCCTCCAAAGCTTACCAACAG
TTTATGTCATGACACATGATTCTATCGCTGTCGGTGAAGATGGGCCAACGCACGAACCAATTGAACAATTGGCAAGTGTT
CGTTCAATGCCTAACTTGAACGTTATTCGTCCAGCAGACGGTAACGAAACAAATGCTGCTTGGAAACGTGCCATTGGTGA
AACAGATCGCCCAACCATGCTTGTATTGACACGTCAAAACCTTCCAGTGCTTGAGGGCACAAAAGAATTGGCAGAAGATG
GTCTTAACAAAGGAGCTTACATCTTGTCAGAAGCCAAAGGCGACCTTGACGGTATCTTGATTGCAACAGGTTCAGAAGTG
AAACTGGCAATGGATACTCAAGAAGCTCTTGAAGCAGAAGGCATTCATGTGCGTGTCGTATCTATGCCATCACAAAATAT
CTTTGACGAACAGTCAGCAGAGTATAAAGAAAGCATCCTACCAGCAGCTGTGACTAAACGTCTCGCTATCGAAGCAGGTT
CAAGCTTTGGCTGGGCAAAATATGTCGGCCTAGCAGGAAAAACATTGACCATTGACACTTGGGGTGCTTCAGCTCCAGGA
AATCGTATCTTCGAAGAATATGGTTTCACTGTGGCAAATGCAACTGAGTTATACAAATCACTCTAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-336)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

55.471

99.546

0.552

Multiple sequence alignment