Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CGZ78_RS05855 Genome accession   NZ_CP022440
Coordinates   1129625..1130119 (+) Length   164 a.a.
NCBI ID   WP_002868865.1    Uniprot ID   Q3I354
Organism   Campylobacter jejuni strain 81-176_G1_B0     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1124625..1135119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ78_RS05840 (CGZ78_05845) - 1126011..1127189 (-) 1179 WP_002856548.1 metal-dependent hydrolase -
  CGZ78_RS05845 (CGZ78_05850) gpsA 1127199..1128095 (-) 897 WP_079254192.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  CGZ78_RS05850 (CGZ78_05855) gatB 1128092..1129510 (-) 1419 WP_002856133.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  CGZ78_RS05855 (CGZ78_05860) luxS 1129625..1130119 (+) 495 WP_002868865.1 S-ribosylhomocysteine lyase Regulator
  CGZ78_RS05860 (CGZ78_05865) - 1130431..1131423 (+) 993 WP_002868864.1 isopenicillin N synthase family oxygenase -
  CGZ78_RS05865 (CGZ78_05870) - 1131434..1132204 (+) 771 WP_002868573.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  CGZ78_RS05870 (CGZ78_05875) metE 1132216..1134480 (+) 2265 WP_002868863.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18257.20 Da        Isoelectric Point: 6.3290

>NTDB_id=200817 CGZ78_RS05855 WP_002868865.1 1129625..1130119(+) (luxS) [Campylobacter jejuni strain 81-176_G1_B0]
MPLLDSFKVNHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCVPNKDIMSEKGTHTLEHLFAGFMRDHLNSDSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=200817 CGZ78_RS05855 WP_002868865.1 1129625..1130119(+) (luxS) [Campylobacter jejuni strain 81-176_G1_B0]
ATGCCATTATTAGATAGTTTTAAAGTTAATCATACCAAAATGCCAGCGCCCGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGTGTATTTGATTTGCGTTTTTGCGTACCAAATAAAGACATTATGAGCGAAAAAGGTACAC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAGATTCGGTTGAAATCATTGATATTTCACCT
ATGGGCTGTCGTACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3I354

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

71.429

98.171

0.701

Multiple sequence alignment