Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BJD94_RS12260 Genome accession   NZ_CP017635
Coordinates   2421087..2422610 (-) Length   507 a.a.
NCBI ID   WP_026050370.1    Uniprot ID   -
Organism   Vibrio vulnificus Env1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2416087..2427610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD94_RS12240 (BJD94_10990) - 2417374..2418360 (+) 987 WP_103155492.1 serine/threonine protein kinase -
  BJD94_RS12245 (BJD94_10995) - 2418393..2418998 (+) 606 WP_046029987.1 thiol:disulfide interchange protein DsbA/DsbL -
  BJD94_RS12250 (BJD94_11000) - 2419050..2419931 (-) 882 WP_072600371.1 acyltransferase -
  BJD94_RS12255 (BJD94_11005) - 2420074..2421048 (+) 975 WP_017419857.1 DUF2860 domain-containing protein -
  BJD94_RS12260 (BJD94_11010) comM 2421087..2422610 (-) 1524 WP_026050370.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BJD94_RS12265 (BJD94_11015) ilvG 2423080..2424726 (+) 1647 WP_011079066.1 acetolactate synthase 2 catalytic subunit -
  BJD94_RS12270 (BJD94_11020) ilvM 2424738..2425022 (+) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  BJD94_RS12275 (BJD94_11025) ilvE 2425034..2425972 (+) 939 WP_095430684.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54699.85 Da        Isoelectric Point: 8.8059

>NTDB_id=200817 BJD94_RS12260 WP_026050370.1 2421087..2422610(-) (comM) [Vibrio vulnificus Env1]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFVGELALSGELRAVKGVLPAALAAKGVSRSLVVPHANGDQAALVGKNMHKSACSL
IEVCAHLCGQQALSLHQTKQALQPSSHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAVVKERVAQARERMQLRNGKVNALLGSREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAPQ
ITRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=200817 BJD94_RS12260 WP_026050370.1 2421087..2422610(-) (comM) [Vibrio vulnificus Env1]
ATGGGGTTGGCGATTATTCATAGCCGTGCCAGTGTGGGCGTCGAAGCGCCTTCCGTGAGCGTGGAAGTGCACATCAGTAA
CGGCTTACCGGGATTTACCTTGGTTGGGTTGCCGGAAACCACCGTAAAGGAATCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGCAACTTTCAATTTCCTGCCAAGCGGATCACCGTCAACTTGGCGCCTGCCGATCTGCCCAAAGAAGGGGGGCGC
TTTGACTTGCCGATCGCACTCGGTATTTTAGCCGCTTCTGAGCAGATCTCCGTTCAGTTTCTCCAGCAACATGAATTTGT
CGGTGAGTTAGCCTTAAGTGGTGAGCTACGAGCGGTGAAAGGGGTGTTGCCAGCCGCTCTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTACCTCATGCGAATGGGGATCAAGCCGCCTTGGTGGGTAAGAACATGCATAAGTCGGCGTGCTCGCTG
ATTGAAGTTTGTGCCCATTTATGTGGCCAGCAAGCCCTGTCATTACATCAAACCAAGCAAGCATTGCAGCCCTCATCACA
TGGTCGAGATTTACAAGACATCATTGGTCAGCAACAAGGAAAGCGAGCGCTAGAAATTGCAGCGGCAGGCAATCACAATT
TGCTGTTTTTAGGGCCTCCTGGGACCGGAAAAACCATGCTGGCGTCACGTTTGCGAGATTTGTTGCCTGAAATGAGTGAG
GAAGAGGCGATGGAAACGGCAGCGGTGGCTTCTTTAACACAAAGCGATATCAACGAGCACAATTGGAAGCAGCGGCCATT
TCGCGCGCCGCATCACTCGAGTTCTATGGCGGCGCTGGTGGGCGGTGGAACCATTCCGCGTCCCGGAGAAATCTCACTCG
CCCACAACGGCTTACTGTTTTTGGATGAGATGCCGGAATTTGAGCGCAAAGTGCTCGATTCAATGCGTGAACCGCTAGAG
TCTGGGGAAATCATCATTTCACGAGCACAAGGTAAAACTCGTTTTCCTGCTCGCTTTCAGTTGGTCGGTGCGTTGAATCC
GAGCCCAACGGGCTATTACGAAGGGAACCAAGCTCGCGCCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGTTTATCGG
GCCCACTGTTGGATCGTTTTGATATGTCACTCGAGATCCCTGCATTACCCAAAGGTACATTGGCAGAAGGGGGTGACCGA
GGTGAACCAACGGCGGTGGTGAAGGAGCGAGTGGCGCAGGCGAGAGAGCGTATGCAGCTTCGTAATGGCAAGGTGAATGC
TCTGTTAGGCAGCCGAGAAATCGAAGCGTTTTGCCCATTGAGTAAGCAAGATGCCGAGTTTCTTGAAACGGCGTTGCACC
GTTTGGGGTTATCGATTCGCGCTTATCACCGCATCATTAAAGTGGCGCGAACCATTGCCGATTTAGAAGGCGCACCTCAG
ATAACACGTGCACACTTAGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGTTAACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

88.363

100

0.884
  comM Vibrio cholerae strain A1552

84.221

100

0.842
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

62.648

99.803

0.625
  comM Legionella pneumophila str. Paris

50.403

97.83

0.493
  comM Legionella pneumophila strain ERS1305867

50.403

97.83

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment