Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BKC12_RS20195 Genome accession   NZ_CP017621
Coordinates   3815025..3816545 (+) Length   506 a.a.
NCBI ID   WP_000050215.1    Uniprot ID   A0A3V4SQX5
Organism   Salmonella enterica subsp. enterica serovar Typhimurium strain 22792     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3810025..3821545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKC12_RS20175 (BKC12_18555) ilvE 3811582..3812511 (-) 930 WP_000208528.1 branched-chain-amino-acid transaminase -
  BKC12_RS20180 (BKC12_18560) ilvM 3812529..3812792 (-) 264 WP_000983260.1 acetolactate synthase 2 small subunit -
  BKC12_RS20185 (BKC12_18565) ilvG 3812789..3814435 (-) 1647 WP_001012570.1 acetolactate synthase 2 catalytic subunit -
  BKC12_RS25895 ilvX 3814438..3814488 (-) 51 WP_192930503.1 peptide IlvX -
  BKC12_RS20190 (BKC12_18570) ilvL 3814575..3814673 (-) 99 WP_001311244.1 ilv operon leader peptide -
  BKC12_RS20195 (BKC12_18575) comM 3815025..3816545 (+) 1521 WP_000050215.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BKC12_RS20200 (BKC12_18580) maoP 3816570..3816908 (-) 339 WP_000840996.1 macrodomain Ori organization protein MaoP -
  BKC12_RS20205 (BKC12_18585) hdfR 3817015..3817863 (+) 849 WP_001541181.1 HTH-type transcriptional regulator HdfR -
  BKC12_RS20220 (BKC12_18600) - 3818305..3819009 (+) 705 WP_001131148.1 FadR/GntR family transcriptional regulator -
  BKC12_RS20225 (BKC12_18605) mdtD 3819021..3820448 (+) 1428 WP_000202071.1 multidrug transporter subunit MdtD -
  BKC12_RS20230 (BKC12_18610) rbsR 3820414..3821412 (-) 999 WP_000224491.1 ribose operon transcriptional repressor RbsR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55013.21 Da        Isoelectric Point: 8.4881

>NTDB_id=200741 BKC12_RS20195 WP_000050215.1 3815025..3816545(+) (comM) [Salmonella enterica subsp. enterica serovar Typhimurium strain 22792]
MSLAIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTASNLEAYELVGELALTGALRGVPGAISSATEAIRAGRNIIVATENAAEVGLISKEGCFIADHL
QTVCAFLEGKHALERPLAQDMASPTATADLRDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRLSGILPPLSNE
EALESAAILSLVNADTVQKRWQQRPFRSPHHSASLTAMVGGGAIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQHASKG
ESSATVKKRVIAAHERQYRRQKKLNARLEGREIQKYCVLHHDDARWLEDTLVHLGLSIRAWQRLLKVARTIADIELADQI
SRQHLQEAVSYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=200741 BKC12_RS20195 WP_000050215.1 3815025..3816545(+) (comM) [Salmonella enterica subsp. enterica serovar Typhimurium strain 22792]
ATGTCACTGGCGATTGTTCATACCCGCGCCGCACTTGGCGTCAATGCGCCGCCTATCACTATAGAGGTGCATATCAGTAA
TGGATTACCGGGATTAACCATGGTTGGCCTACCGGAAACCACGGTAAAAGAGGCGCGTGACCGGGTACGTAGTGCGATTA
TTAATAGCGGATATGAATTTCCGGCTAAAAAAATAACCATTAACCTTGCTCCAGCCGATCTACCGAAAGAGGGTGGAAGG
TATGACCTGCCTATTGCTGTTGCGCTTCTGGCCGCGTCTGAGCAGCTTACAGCGTCGAATCTTGAGGCATATGAGCTGGT
GGGTGAGTTAGCGCTTACAGGCGCATTACGCGGCGTTCCTGGCGCAATATCAAGTGCAACGGAAGCCATCAGGGCCGGCA
GAAATATTATCGTCGCAACAGAGAACGCGGCGGAGGTTGGGCTTATAAGCAAAGAAGGATGTTTTATCGCCGATCATCTA
CAAACCGTCTGCGCCTTTCTGGAAGGGAAACACGCCCTGGAAAGACCTTTAGCTCAGGATATGGCATCGCCTACCGCAAC
TGCCGATCTTCGCGATGTGATCGGTCAGGAGCAGGGTAAACGCGGCCTGGAGATTACAGCGGCAGGGGGACATAATCTGC
TATTGATCGGCCCGCCGGGTACGGGTAAAACCATGCTGGCCAGTCGACTGAGCGGGATTCTTCCACCATTAAGCAATGAG
GAGGCGTTGGAAAGCGCCGCGATCCTCAGTCTGGTTAATGCCGATACGGTACAAAAACGATGGCAGCAACGCCCCTTTCG
CTCACCTCATCATAGCGCCTCACTTACTGCTATGGTCGGCGGCGGCGCAATACCCGCCCCGGGAGAGATATCGCTGGCGC
ACAACGGAATTTTGTTCCTTGATGAATTGCCTGAATTTGAACGACGCACACTGGATGCGCTACGTGAACCTATAGAATCC
GGTCAAATTCATTTATCCCGTACCAGAGCGAAAATAACGTACCCTGCCAGGTTCCAGTTAATCGCCGCAATGAATCCCAG
CCCGACCGGACATTATCAGGGAAACCATAATCGCTGCACGCCAGAACAGACACTACGTTACCTTAATCGGTTGTCAGGCC
CGTTTCTTGATCGTTTTGACCTTTCGCTTGAGATACCGCTTCCACCGCCCGGGATTCTTAGCCAACACGCCTCAAAGGGT
GAGAGCAGCGCTACGGTAAAAAAGCGGGTCATCGCCGCCCATGAACGGCAGTACCGACGCCAGAAGAAGTTAAACGCGCG
TCTGGAGGGTCGCGAAATCCAAAAATATTGTGTTTTGCATCACGATGACGCCCGCTGGCTTGAAGACACGCTGGTGCATC
TTGGATTATCCATTCGCGCCTGGCAGCGTTTACTAAAAGTTGCCAGAACCATTGCCGACATAGAACTGGCTGACCAGATC
TCGCGTCAGCATTTGCAGGAGGCGGTAAGCTATCGGGCGATAGACAGGTTGTTAATTCATTTGCAAAAGCTGTTGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3V4SQX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.317

100

0.589
  comM Vibrio cholerae strain A1552

58.812

99.802

0.587
  comM Glaesserella parasuis strain SC1401

58.153

100

0.585
  comM Vibrio campbellii strain DS40M4

57.341

99.605

0.571
  comM Legionella pneumophila str. Paris

47.686

98.221

0.468
  comM Legionella pneumophila strain ERS1305867

47.686

98.221

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.998

100

0.431

Multiple sequence alignment