Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BJL90_RS21690 Genome accession   NZ_CP017603
Coordinates   4586165..4586740 (-) Length   191 a.a.
NCBI ID   WP_083329694.1    Uniprot ID   -
Organism   Clostridium formicaceticum strain ATCC 27076     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4581165..4591740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJL90_RS21250 (BJL90_21250) - 4581210..4584302 (+) 3093 WP_070972842.1 DUF4183 domain-containing protein -
  BJL90_RS21255 (BJL90_21255) - 4584379..4586151 (-) 1773 WP_070972844.1 ABC transporter ATP-binding protein -
  BJL90_RS21690 rcrQ 4586165..4586740 (-) 576 WP_083329694.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21627.59 Da        Isoelectric Point: 4.9622

>NTDB_id=200722 BJL90_RS21690 WP_083329694.1 4586165..4586740(-) (rcrQ) [Clostridium formicaceticum strain ATCC 27076]
MRFFDPQAGSILMNGLDIREYSLEDLRNQIAVVFQDTYLFYGTVSENLSVAKPNATLEELERAAKLAGAHEFIVDLPQGY
DTVIGERGIRLSGGQKQRLSIARAFLKDAPLLILDEATSNVDALSEEKIQHALEHLMKNKTTILIAHRLSTIQNADRIFV
MDDQELKEEGNHRELLFKKGFYAQLIEAQHE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=200722 BJL90_RS21690 WP_083329694.1 4586165..4586740(-) (rcrQ) [Clostridium formicaceticum strain ATCC 27076]
ATGAGGTTCTTTGATCCACAAGCTGGCAGTATTTTGATGAATGGACTGGATATTCGTGAATATTCCCTTGAGGATTTGCG
AAATCAAATTGCTGTTGTTTTTCAGGATACTTATCTTTTTTATGGTACTGTTTCAGAGAACCTAAGCGTTGCCAAACCTA
ATGCCACATTAGAAGAACTGGAAAGAGCGGCAAAGCTTGCTGGAGCCCATGAGTTTATTGTAGATTTACCTCAGGGTTAT
GATACAGTCATTGGGGAAAGGGGGATACGTCTTTCAGGGGGACAAAAACAGAGACTTTCTATTGCAAGAGCCTTCTTAAA
AGATGCGCCTCTATTGATTTTGGATGAAGCTACCTCCAATGTGGATGCCCTTAGTGAAGAAAAAATCCAGCACGCACTAG
AGCATCTAATGAAAAATAAAACCACGATACTGATTGCCCACCGTCTATCAACCATCCAAAATGCAGATAGAATTTTTGTC
ATGGATGATCAAGAACTAAAGGAAGAAGGAAACCATCGTGAGTTGCTCTTCAAAAAAGGTTTTTATGCCCAGTTGATTGA
GGCACAACATGAGTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(3-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.323

98.953

0.508
  comA/nlmT Streptococcus mutans UA159

43.011

97.382

0.419
  comA Streptococcus mitis NCTC 12261

41.799

98.953

0.414
  comA Streptococcus pneumoniae Rx1

41.799

98.953

0.414
  comA Streptococcus pneumoniae D39

41.799

98.953

0.414
  comA Streptococcus pneumoniae R6

41.799

98.953

0.414
  comA Streptococcus mitis SK321

41.27

98.953

0.408
  comA Streptococcus pneumoniae TIGR4

41.27

98.953

0.408
  comA Streptococcus gordonii str. Challis substr. CH1

38.947

99.476

0.387

Multiple sequence alignment