Detailed information NTG0200693

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: CGZ53_RS04315
• Genome accession: NZ_CP022435
• Coordinates: 828760..829440 (+)
• Length: 226 a.a.
• NCBI ID: WP_046392122.1
• Uniprot ID: -
• Organism: Streptococcus uberis strain NZ01
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 823760..834440

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CGZ53_RS04290 (CGZ53_04290)	-	823855..824448 (+)	594	WP_012658342.1	histidine phosphatase family protein	-
CGZ53_RS04295 (CGZ53_04295)	-	824462..825073 (+)	612	WP_046389300.1	histidine phosphatase family protein	-
CGZ53_RS04300 (CGZ53_04300)	-	825152..826027 (+)	876	WP_233845140.1	transporter	-
CGZ53_RS04305 (CGZ53_04305)	-	826059..827489 (+)	1431	WP_037592231.1	6-phospho-beta-glucosidase	-
CGZ53_RS04310 (CGZ53_04310)	-	827591..828715 (+)	1125	WP_100912019.1	AI-2E family transporter	-
CGZ53_RS04315 (CGZ53_04315)	radC	828760..829440 (+)	681	WP_046392122.1	RadC family protein	Machinery gene
CGZ53_RS04320 (CGZ53_04320)	-	829437..830138 (-)	702	WP_037592228.1	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	-
CGZ53_RS04325 (CGZ53_04325)	-	830156..830797 (-)	642	WP_012658349.1	redox-sensing transcriptional repressor Rex	-
CGZ53_RS04330 (CGZ53_04330)	-	830961..831179 (-)	219	WP_012658350.1	DUF4649 family protein	-
CGZ53_RS04335 (CGZ53_04335)	-	831209..831559 (-)	351	WP_012658351.1	DUF1831 domain-containing protein	-
CGZ53_RS04340 (CGZ53_04340)	-	831562..832692 (-)	1131	WP_012658352.1	cysteine desulfurase family protein	-
CGZ53_RS04345 (CGZ53_04345)	-	832682..833653 (-)	972	WP_046392123.1	ribose-phosphate diphosphokinase	-
CGZ53_RS04350 (CGZ53_04350)	-	833772..834344 (-)	573	WP_037592225.1	CYTH domain-containing protein	-

Sequence

Protein

• Length: 226 a.a.
• Molecular weight: 25930.29 Da
• Isoelectric Point: 9.3536

>NTDB_id=200693 CGZ53_RS04315 WP_046392122.1 828760..829440(+) (radC) [Streptococcus uberis strain NZ01]
MYAVKLNKDTLLPREKLVQYGVEQLSHQELLAILLRTGNKEKHVMELASHILHCLESLADFDKLSLQELQRLPGIGKVKA
IELKAMVELCHRIQKAKSSHSIQILSSYQVAKRMMHELGDKKQEHLIAIYLDTQNRIIEEKTIFIGSVRRSIAEPREILH
FACRNMATSLIVVHNHPSGLTNPSENDVAFTKKIKRSCDHLGINCLDHIIVGKKQYYSFREKSDIF

Nucleotide

• Length: 681 bp

>NTDB_id=200693 CGZ53_RS04315 WP_046392122.1 828760..829440(+) (radC) [Streptococcus uberis strain NZ01]
ATGTATGCTGTTAAACTAAATAAAGACACACTTTTACCAAGAGAAAAACTTGTTCAATATGGTGTTGAACAACTCAGTCA
CCAAGAATTATTAGCCATCTTACTGCGGACTGGAAATAAAGAAAAACATGTTATGGAGTTAGCTTCGCATATTTTACATT
GTTTGGAGAGTCTAGCAGATTTCGATAAATTATCTCTACAAGAATTACAACGATTACCAGGGATTGGAAAAGTAAAAGCG
ATAGAATTGAAAGCAATGGTAGAACTATGCCATCGTATCCAAAAAGCAAAATCTTCCCACTCTATTCAGATTTTATCAAG
TTACCAAGTGGCTAAACGAATGATGCACGAGTTAGGCGATAAAAAACAAGAACATCTGATTGCTATCTATCTGGACACAC
AAAATCGTATCATAGAGGAAAAAACTATTTTTATAGGTAGTGTCAGACGTTCCATTGCAGAACCAAGGGAAATCTTACAT
TTCGCCTGCCGCAATATGGCAACTAGTTTGATTGTTGTTCATAATCATCCGTCTGGTTTGACCAATCCCAGCGAAAATGA
TGTTGCATTTACTAAAAAAATAAAACGATCATGTGATCACTTGGGCATAAACTGCCTAGATCACATCATCGTTGGAAAAA
AACAATATTATAGTTTTCGAGAAAAATCTGACATTTTTTAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (106-222)

• UPF0758 N-terminal (UPF0758_N) (13-81)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Streptococcus pneumoniae TIGR4	59.735	100	0.597
radC	Streptococcus pneumoniae R6	59.292	100	0.593
radC	Streptococcus pneumoniae D39	59.292	100	0.593
radC	Streptococcus gordonii str. Challis substr. CH1	56.195	100	0.562
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	41.232	93.363	0.385
radC	Haemophilus influenzae Rd KW20	38.532	96.46	0.372