Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SDD27957_00140 Genome accession   CM001076
Coordinates   38385..39149 (+) Length   254 a.a.
NCBI ID   EFY01738.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 33385..44149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_00115 - 33672..33962 (-) 291 EFY01733.1 transposase -
  SDD27957_00120 - 34174..34953 (-) 780 EFY01734.1 ISSag4, transposase orfB -
  SDD27957_00125 - 34989..35279 (-) 291 EFY01735.1 hypothetical protein -
  SDD27957_00130 - 35830..37026 (+) 1197 EFY01736.1 Putative secreted protein Streptputative secreted protein -
  SDD27957_00135 - 37193..38155 (+) 963 EFY01737.1 ribose-phosphate pyrophosphokinase -
  SDD27957_00140 recO 38385..39149 (+) 765 EFY01738.1 DNA repair protein RecO Machinery gene
  SDD27957_00145 - 39256..40263 (+) 1008 EFY01739.1 putative glycerol-3-phosphate acyltransferase PlsX -
  SDD27957_00150 - 40256..40498 (+) 243 EFY01740.1 acyl carrier protein -
  SDD27957_00165 - 42074..42784 (+) 711 EFY01741.1 phosphoribosylaminoimidazole-succinocarboxamide synthase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29985.18 Da        Isoelectric Point: 5.7481

>NTDB_id=20007 SDD27957_00140 EFY01738.1 38385..39149(+) (recO) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MQLNESLGIVLFNRNYREDDKLVKIFTEAAGKRMFFVKHISRSKLSSVIQPLTAADFIFKLNESGLSYIDDYNHVDTYQQ
INQDLFRLSYASYVVALADAAISDNEPDPHLFAFLKKTLDLMEEGLDYEVLTNIFEIQVLERFGIRINFHDCVFCHRVGL
PFDFSHHYSGVLCPEHYHKDDYRNHLDPNVIYLLDRFQTIQFDELRTISLNDEMKRKLRYFIDELYHDYVGIKLKSKTFI
DDLAKWGDIMKPKD

Nucleotide


Download         Length: 765 bp        

>NTDB_id=20007 SDD27957_00140 EFY01738.1 38385..39149(+) (recO) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGCAGTTAAACGAGTCATTGGGAATTGTTCTTTTTAATAGAAATTATCGAGAAGATGATAAATTGGTCAAGATATTCAC
AGAGGCAGCAGGCAAACGTATGTTTTTCGTGAAACATATTAGTCGTTCTAAACTTTCTTCCGTCATTCAACCTTTAACGG
CTGCTGACTTTATATTTAAGTTGAACGAATCAGGTCTTTCTTATATTGACGACTACAATCATGTGGATACTTATCAACAG
ATTAATCAGGATCTTTTTCGACTTTCCTATGCGAGCTATGTAGTGGCTTTGGCAGATGCTGCTATTTCAGATAATGAGCC
AGATCCTCACCTCTTTGCCTTTTTGAAAAAGACACTTGATTTAATGGAAGAGGGGTTGGATTACGAGGTTTTGACCAACA
TTTTTGAAATCCAAGTTTTAGAGCGTTTTGGGATTAGAATAAACTTTCATGACTGTGTTTTTTGTCATCGTGTCGGTTTA
CCATTTGATTTTTCACATCACTATTCGGGTGTGCTTTGCCCTGAACATTATCATAAAGATGATTACCGGAATCATCTAGA
TCCTAATGTCATCTATTTACTAGACCGTTTTCAAACTATTCAGTTTGATGAATTGAGAACCATTTCCTTAAATGATGAGA
TGAAAAGAAAACTTCGTTATTTTATTGATGAGTTATATCATGACTATGTAGGAATCAAGTTAAAAAGTAAAACGTTTATT
GATGATTTAGCTAAATGGGGCGATATTATGAAACCAAAGGACTAG

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.821

96.85

0.618

Multiple sequence alignment