Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BIZ42_RS08360 Genome accession   NZ_CP017483
Coordinates   1915035..1916537 (+) Length   500 a.a.
NCBI ID   WP_070426142.1    Uniprot ID   -
Organism   Stenotrophomonas sp. LM091     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1910035..1921537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIZ42_RS08330 (BIZ42_08330) speE 1910264..1911118 (+) 855 WP_070426139.1 polyamine aminopropyltransferase -
  BIZ42_RS08335 (BIZ42_08335) - 1911210..1912115 (-) 906 WP_026070109.1 aspartyl/asparaginyl beta-hydroxylase domain-containing protein -
  BIZ42_RS08340 (BIZ42_08340) - 1912592..1913245 (+) 654 WP_070426140.1 RIO1 family regulatory kinase/ATPase -
  BIZ42_RS08345 (BIZ42_08345) - 1913285..1913623 (-) 339 WP_019185257.1 P-II family nitrogen regulator -
  BIZ42_RS08350 (BIZ42_08350) - 1913750..1914013 (+) 264 WP_019185256.1 accessory factor UbiK family protein -
  BIZ42_RS08355 (BIZ42_08355) yidA 1914036..1914875 (-) 840 WP_070426141.1 sugar-phosphatase -
  BIZ42_RS08360 (BIZ42_08360) comM 1915035..1916537 (+) 1503 WP_070426142.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BIZ42_RS08365 (BIZ42_08365) - 1916673..1917122 (+) 450 WP_070426143.1 YcxB family protein -
  BIZ42_RS08370 (BIZ42_08370) - 1917135..1918085 (-) 951 WP_070426144.1 glutathione S-transferase family protein -
  BIZ42_RS08375 (BIZ42_08375) - 1918282..1918953 (+) 672 WP_070426145.1 VOC family protein -
  BIZ42_RS19690 - 1919018..1919161 (-) 144 WP_019185247.1 hypothetical protein -
  BIZ42_RS08380 (BIZ42_08380) - 1919429..1920853 (-) 1425 WP_019185246.1 TIGR00366 family protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53259.04 Da        Isoelectric Point: 7.9052

>NTDB_id=198713 BIZ42_RS08360 WP_070426142.1 1915035..1916537(+) (comM) [Stenotrophomonas sp. LM091]
MSLALVHSRARAGVKAPAVRIEVFLSGGLPHTQIVGLPAAAVRESRDRVRAALICARFEFPQRRITINLAPADLPKEGGR
FDLAIALGILAASGQIDAQSLNKYEFLGELALTGELRGVDGVLPAAIAAAGDGRSLIVAAANSEEAALAQHADVRIARTL
LEVCSALESGTLPPAVAAATVPVSIPDLRDVRGQLQARRALEVAAAGGHHLLLLGTPGCGKTLLASRLPGILPAASELEA
LEAATIASCSGQGIDAGRWRQRPYRAPHHTASAVALIGGGSHPRPGEISLAHNGVLFLDELPEWSRHALEVMREPIESGV
AVVSRAARTERFPARFQLVAAMNPCPCGWAGDRSGRCLCSEEVIQRYRGRVSGPLMDRIDLHVEVPRLDPRELRDDAPLG
EDSASVRARVVAARDVQLLRSGKANAQLLPFELSAHCRLSREDQQLLEDAVERLQLSARSMHRILRVARTLADLGHAQNI
ETAHVAEAIGYRQLDRGGVS

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=198713 BIZ42_RS08360 WP_070426142.1 1915035..1916537(+) (comM) [Stenotrophomonas sp. LM091]
ATGAGCCTCGCGCTGGTGCACAGCCGTGCCCGCGCCGGTGTAAAAGCCCCCGCCGTGCGCATCGAGGTATTCCTGTCCGG
CGGGTTGCCGCACACCCAGATCGTCGGGCTGCCCGCTGCCGCCGTGCGGGAATCGCGCGACCGCGTGCGCGCCGCGCTGA
TCTGCGCGCGGTTCGAGTTTCCGCAGCGGCGGATCACCATCAATCTGGCTCCCGCTGATCTGCCCAAGGAGGGTGGCCGA
TTCGATCTGGCGATCGCGCTCGGCATCCTCGCCGCCAGTGGCCAGATCGATGCGCAATCCCTGAACAAGTACGAATTCCT
GGGCGAACTGGCCCTCACCGGCGAGCTGCGCGGTGTCGACGGTGTCCTGCCTGCCGCGATCGCAGCCGCCGGGGACGGCC
GGAGCCTGATCGTGGCTGCCGCCAACAGTGAAGAGGCGGCGTTGGCCCAGCATGCCGACGTACGCATCGCCCGGACGCTG
CTGGAAGTCTGCAGCGCCCTTGAAAGCGGCACGCTGCCACCGGCTGTGGCCGCCGCCACGGTGCCGGTCAGCATTCCCGA
CCTGCGCGATGTGCGCGGGCAGCTGCAGGCGCGCCGGGCGCTGGAAGTCGCGGCGGCCGGCGGGCACCACCTGCTGCTGC
TCGGCACGCCGGGCTGCGGCAAGACGCTGCTCGCGTCGCGTCTGCCCGGCATCCTGCCCGCGGCCAGCGAGCTCGAGGCC
CTGGAAGCGGCGACCATTGCCTCCTGCAGCGGCCAGGGCATTGATGCGGGGCGCTGGCGGCAGCGGCCCTATAGAGCGCC
GCACCATACCGCCAGCGCGGTGGCGCTGATCGGCGGCGGCTCGCATCCCAGGCCAGGCGAGATCTCGTTGGCACACAACG
GGGTGCTGTTTCTGGATGAGCTGCCCGAATGGAGCCGGCACGCGCTCGAGGTCATGCGCGAGCCGATCGAATCCGGGGTC
GCCGTGGTCAGCCGCGCGGCAAGGACGGAGCGCTTTCCCGCGCGGTTCCAGCTGGTTGCGGCGATGAACCCCTGCCCTTG
CGGCTGGGCGGGGGATCGCAGTGGCCGCTGTCTCTGCAGCGAAGAGGTCATCCAGCGTTACCGGGGGCGGGTTTCCGGGC
CCTTGATGGACCGCATCGACCTGCATGTCGAGGTGCCGCGGCTGGACCCGCGCGAGCTGCGCGATGACGCGCCGCTGGGC
GAAGACAGCGCGAGTGTTCGCGCCCGGGTGGTGGCCGCGCGGGACGTGCAGCTGCTGCGCAGCGGAAAGGCCAACGCCCA
ACTACTGCCGTTCGAGCTGAGCGCGCATTGCCGGTTGTCGCGGGAGGATCAGCAGCTCCTGGAGGATGCCGTGGAGCGAC
TGCAGCTGTCAGCACGCTCCATGCATCGCATCCTGCGGGTGGCGCGGACGTTGGCGGATCTGGGGCATGCCCAGAACATC
GAGACCGCGCATGTGGCGGAGGCGATCGGGTATCGGCAGTTGGATCGGGGTGGCGTCTCCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(187-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.707

99.8

0.536
  comM Haemophilus influenzae Rd KW20

52.684

100

0.53
  comM Vibrio campbellii strain DS40M4

52.906

99.8

0.528
  comM Glaesserella parasuis strain SC1401

51.292

100

0.516
  comM Legionella pneumophila str. Paris

48.594

99.6

0.484
  comM Legionella pneumophila strain ERS1305867

48.594

99.6

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.351

100

0.47

Multiple sequence alignment