Detailed information NTG0198698

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: BJK05_RS15660
• Genome accession: NZ_CP017482
• Coordinates: 3449014..3450540 (+)
• Length: 508 a.a.
• NCBI ID: WP_095700897.1
• Uniprot ID: -
• Organism: Pectobacterium polaris strain NIBIO1392
• Function: require for natural transformation (predicted from homology) Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	3450611..3451786	3449014..3450540	flank	71

Gene organization within MGE regions

Location: 3449014..3451786

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJK05_RS15660 (BJK05_15155)	comM	3449014..3450540 (+)	1527	WP_095700897.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
BJK05_RS15665 (BJK05_15160)	-	3450611..3451786 (-)	1176	WP_095700898.1	IS4 family transposase	-

Sequence

Protein

• Length: 508 a.a.
• Molecular weight: 55368.98 Da
• Isoelectric Point: 6.7371

>NTDB_id=198698 BJK05_RS15660 WP_095700897.1 3449014..3450540(+) (comM) [Pectobacterium polaris strain NIBIO1392]
MSLAVTYTRAMIGVQAPGVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPQIGEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTHWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLAARQVQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGDRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide

• Length: 1527 bp

>NTDB_id=198698 BJK05_RS15660 WP_095700897.1 3449014..3450540(+) (comM) [Pectobacterium polaris strain NIBIO1392]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCGCCGGGCGTTTATATCGAAGTTCACATCAGCAG
CGGGCTACCGGCCCTAACGCTGGTGGGTTTACCAGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCAAAGCGCATCACGGTCAACCTCGCCCCCGCAGACCTGCCAAAAGAAGGGGGACGC
TACGATCTGCCAATTGCTCTGGCGATTCTGGCAGCCTCAGAACAAATCGATGGTGAAAAGCTAAGTCGCTACGAATTTCT
TGGAGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCTGCATTGGAAGCCATAAAGTCAGGCC
GCCAGCTTATCTTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAGGGTGAAGCGCTGATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGCGGAGAAGAGGAATTGCTCAGTTGCTCCGACATGACGCCTGTTCCACAGATCGGGGA
AGATACGCTCGACTTGAAGGATATCATCGGTCAGGAGCAAGCTAAACGCGCGCTGGAAATCGCGGCGGCAGGCGGTCACA
ACCTGCTCTTGCTAGGACCACCGGGAACAGGGAAAACCATGCTGGCGAGTCGGTTAGGCAATCTGATGCCGCCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAATAGCCTAATTAACATTGATGCTACCATGACGCACTGGCGGGCCAGACC
ATTCAGAGCACCTCACCATAGCTCTTCCATGGCTGCACTTGTGGGCGGAGGGTCACTGCCCAAACCCGGAGAAATCTCGC
TCGCCCACAACGGTGTACTATTTTTGGACGAATTACCGGAGTTTGAGCGACGCGTACTGGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCCAAAGTGTGCTACCCAGCACGGGTGCAACTCGTCGCCGCAATGAA
TCCCAGCCCGTCAGGCCACTATCAGGGCATTCATAACCGATTACCCGCACAGCAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCTATCGAAGTCCCTTTGCTACCACCAGGGGTTTTATCTCAGCAGCATTAC
CAAGGCGAAAGCAGCGCGACAATTCGTGAGCGCGTGCTGGCCGCACGGCAGGTACAACTGAAGCGGGCAAATAAAATTAA
CGCACTGCTCACGTCACGCGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCGACCTATCTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGTGCGTGGCACAGGATATTGAAAGTCGCGCGCACGATCGCTGACCTCGGCGATCGGGAC
AACATTGAGAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGATTGCTCATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (191-390)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Haemophilus influenzae Rd KW20	64.229	99.606	0.64
comM	Vibrio cholerae strain A1552	64.215	99.016	0.636
comM	Glaesserella parasuis strain SC1401	63.065	100	0.632
comM	Vibrio campbellii strain DS40M4	62.648	99.606	0.624
comM	Legionella pneumophila str. Paris	50.501	98.228	0.496
comM	Legionella pneumophila strain ERS1305867	50.501	98.228	0.496
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.109	100	0.467