Detailed information NTG0198665

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: BJJ97_RS03850
• Genome accession: NZ_CP017481
• Coordinates: 855740..857266 (+)
• Length: 508 a.a.
• NCBI ID: WP_095993119.1
• Uniprot ID: -
• Organism: Pectobacterium polaris strain NIBIO1006
• Function: require for natural transformation (predicted from homology) Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	857337..858512	855740..857266	flank	71

Gene organization within MGE regions

Location: 855740..858512

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJJ97_RS03850 (BJJ97_03775)	comM	855740..857266 (+)	1527	WP_095993119.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
BJJ97_RS03855 (BJJ97_03780)	-	857337..858512 (-)	1176	WP_095993120.1	IS4 family transposase	-

Sequence

Protein

• Length: 508 a.a.
• Molecular weight: 55422.04 Da
• Isoelectric Point: 6.8205

>NTDB_id=198665 BJJ97_RS03850 WP_095993119.1 855740..857266(+) (comM) [Pectobacterium polaris strain NIBIO1006]
MSLAVTYTRAMIGVQAPGVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPQIGEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPSGVLSQQHY
QGESSATIRERVLTARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGDRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide

• Length: 1527 bp

>NTDB_id=198665 BJJ97_RS03850 WP_095993119.1 855740..857266(+) (comM) [Pectobacterium polaris strain NIBIO1006]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCGCCGGGCGTTTATATCGAAGTTCACATCAGCAG
CGGGCTACCGGCCCTAACGCTGGTCGGCTTACCAGAAACCACCGTCAAGGAAGCACGCGATCGCGTGCGCAGCGCACTTA
TCAATTGCGGATTTACATTTCCAGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAGGAAGGGGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCTGCATTGGAAGCCATAAAGTCAGGCC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAGGGTGAAGCGCTGATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGCGGAGAAGAGGAATTGCTCAGTTGCTCCGACATGACGCCCGTTCCACAGATCGGGGA
AGATACGCTCGACTTGAAGGATATCATCGGTCAGGAGCAAGCTAAACGCGCACTGGAAATAGCGGCGGCAGGCGGTCACA
ACCTGCTCTTGCTAGGACCACCGGGAACAGGGAAAACCATGCTGGCGAGTCGGTTAGGCAACCTGATGCCACCATTAAGC
GATGAAGAAGCACTGGAAAGCGCCGCCATCAACAGTCTAATCAACATTGATGCCACCATGACGCGCTGGCGGGCCAGACC
ATTCAGAGCACCTCACCATAGCTCTTCCATGGCTGCACTTGTGGGCGGAGGGTCACTGCCCAAACCCGGAGAAATCTCGC
TCGCCCACAACGGCGTACTGTTTCTGGATGAATTACCGGAGTTTGAGCGACGCGTACTGGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCCAAAGTGTGCTATCCAGCACGGGTGCAGCTGGTCGCCGCAATGAA
TCCCAGCCCATCGGGCCACTATCAGGGCATTCATAACCGGTTACCCGCACAGCAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTGCTACCATCAGGGGTTTTATCTCAGCAGCATTAC
CAAGGCGAAAGCAGCGCGACAATTCGTGAGCGCGTGCTGACCGCACGGCAGATACAACTGAAGCGGGCAAATAAAATCAA
CGCACTGCTCACGTCACGCGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCAACCTATCTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGTGCGTGGCACAGGATATTGAAAGTTGCGCGCACGATCGCTGACCTCGGCGATCGGGAC
AACATAGAGAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGATTGCTCATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (191-390)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Haemophilus influenzae Rd KW20	64.427	99.606	0.642
comM	Vibrio cholerae strain A1552	64.215	99.016	0.636
comM	Glaesserella parasuis strain SC1401	63.065	100	0.632
comM	Vibrio campbellii strain DS40M4	62.648	99.606	0.624
comM	Legionella pneumophila str. Paris	50.701	98.228	0.498
comM	Legionella pneumophila strain ERS1305867	50.701	98.228	0.498
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.304	100	0.469