Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BJI69_RS05735 Genome accession   NZ_CP017480
Coordinates   1253130..1254632 (-) Length   500 a.a.
NCBI ID   WP_071924889.1    Uniprot ID   A0A1L3EQW3
Organism   Luteibacter rhizovicinus DSM 16549 strain LJ96     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1248130..1259632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJI69_RS05720 (BJI69_05700) - 1249317..1250462 (-) 1146 WP_071924888.1 family 43 glycosylhydrolase -
  BJI69_RS05725 (BJI69_05705) - 1250582..1251901 (+) 1320 WP_046969541.1 ABC transporter permease -
  BJI69_RS05730 (BJI69_05710) - 1251912..1253126 (+) 1215 WP_046981240.1 FtsX-like permease family protein -
  BJI69_RS05735 (BJI69_05715) comM 1253130..1254632 (-) 1503 WP_071924889.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BJI69_RS05740 (BJI69_05720) - 1254806..1255060 (-) 255 WP_046981909.1 accessory factor UbiK family protein -
  BJI69_RS05745 (BJI69_05725) glnK 1255238..1255576 (+) 339 WP_046981907.1 P-II family nitrogen regulator -
  BJI69_RS05750 (BJI69_05730) - 1255595..1256125 (-) 531 WP_046966972.1 hypothetical protein -
  BJI69_RS05755 (BJI69_05735) gpmA 1256355..1257089 (-) 735 WP_046966971.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  BJI69_RS05760 (BJI69_05740) - 1257244..1257891 (+) 648 WP_046966970.1 hypothetical protein -
  BJI69_RS05765 (BJI69_05745) hemF 1258023..1258925 (-) 903 WP_046966969.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53870.58 Da        Isoelectric Point: 7.0070

>NTDB_id=198648 BJI69_RS05735 WP_071924889.1 1253130..1254632(-) (comM) [Luteibacter rhizovicinus DSM 16549 strain LJ96]
MSLAVTLSRAQEGVTAPQVVVEVHLSGGLPSTSIVGLPDSAVREARDRVRVAIQNTAFEYPNRRVTVNLAPAELPKDGGR
FDLAIALGILAAGSQVPRERLDDCEFLGELALSGELRAVPGILPALIRARRAGRRIVVPRANAAEAALVGEADVLLADSL
AEVCAWLGGHGSLSAPASATDFYDLPTCGPDMRDVRGQYQARRVLEIAAAGRHHLLMIGPPGTGKTMLAERLPGILPPMT
ESEALESCAIRSLSSEAIDPACWRRRPFRAPHHTASGVALVGGGSTPRPGEISLAHNGVLFLDELPEFSRHVLEVLREPL
ESGQIVISRAARQSTFPAEFQLIAAMNPCPCGYAGDPTHDCRCTPDQVQRYRARISGPLLDRIDLCVDVPRVPITHLTAP
RGPHDDDSATVRRRVINAREKALLRAGQPNAELSVVNLERDCALPQAEREWLEAAVEKLGASARAYHRVLRVARTIADLE
GGAGCVEQHHLAEALHYRRF

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=198648 BJI69_RS05735 WP_071924889.1 1253130..1254632(-) (comM) [Luteibacter rhizovicinus DSM 16549 strain LJ96]
ATGAGCCTCGCCGTCACCCTTTCGCGGGCGCAGGAAGGTGTCACCGCGCCGCAGGTCGTCGTCGAGGTGCATCTGTCCGG
CGGACTGCCTTCCACCTCCATCGTCGGGCTGCCTGATTCGGCGGTACGCGAAGCGCGTGATCGTGTCCGCGTCGCCATCC
AGAACACTGCCTTCGAATACCCCAACCGCCGGGTCACCGTGAACCTGGCGCCCGCCGAGCTGCCGAAGGACGGAGGCCGG
TTCGACCTCGCCATCGCCCTGGGCATCCTGGCCGCTGGCTCGCAGGTGCCGCGCGAGCGACTCGATGACTGCGAATTCCT
CGGCGAGCTGGCCTTGTCGGGTGAGTTGCGAGCCGTGCCCGGGATACTTCCCGCCTTGATCCGCGCACGCCGCGCCGGCC
GGCGCATCGTCGTGCCACGTGCCAATGCGGCCGAAGCCGCCCTCGTCGGCGAAGCCGACGTCCTGCTTGCCGACAGCCTG
GCCGAGGTATGCGCCTGGTTGGGCGGCCACGGCAGCCTCAGCGCACCGGCCTCGGCGACCGATTTCTACGACCTGCCCAC
CTGTGGCCCGGACATGCGCGATGTGCGCGGCCAGTACCAGGCCCGCCGTGTCCTGGAAATCGCCGCTGCGGGCAGGCATC
ACCTGCTGATGATCGGCCCGCCCGGCACCGGCAAGACCATGCTCGCCGAGCGCCTGCCGGGCATCCTGCCGCCGATGACC
GAATCCGAGGCGCTGGAGAGCTGCGCTATCCGCTCTCTGTCCAGCGAGGCCATCGATCCGGCCTGCTGGCGCCGCCGCCC
CTTCCGTGCGCCGCACCACACGGCGTCGGGCGTGGCCCTGGTCGGTGGCGGCTCGACACCGCGTCCGGGCGAGATCTCGC
TGGCGCATAACGGTGTGCTCTTCCTCGACGAGCTCCCCGAGTTCAGCCGTCACGTGCTCGAAGTACTGCGCGAGCCGCTC
GAGTCGGGCCAGATCGTGATCTCCCGGGCGGCGCGGCAGTCGACGTTCCCCGCCGAGTTCCAACTCATTGCTGCGATGAA
TCCCTGCCCATGCGGCTACGCCGGCGATCCGACCCACGACTGTCGATGTACGCCGGACCAGGTGCAGCGCTACCGCGCAC
GTATTTCCGGCCCGCTGCTGGATCGCATCGACCTCTGTGTCGACGTTCCCCGCGTGCCGATCACCCACCTCACCGCGCCT
CGCGGTCCGCATGACGACGACAGCGCCACTGTCCGGCGTCGCGTGATCAACGCACGCGAGAAGGCCTTGCTTCGCGCTGG
CCAGCCGAACGCCGAGCTGAGCGTCGTGAACCTCGAGCGCGACTGTGCACTACCGCAGGCCGAGCGCGAGTGGCTGGAAG
CGGCGGTCGAGAAGCTCGGTGCCTCGGCACGCGCTTACCACCGGGTGCTACGCGTCGCGCGCACCATCGCCGATCTCGAA
GGTGGGGCAGGTTGTGTCGAGCAGCACCACTTGGCCGAGGCGCTGCACTATCGCCGGTTCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L3EQW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.618

99.6

0.544
  comM Haemophilus influenzae Rd KW20

52.964

100

0.536
  comM Vibrio campbellii strain DS40M4

53.213

99.6

0.53
  comM Glaesserella parasuis strain SC1401

52.295

100

0.524
  comM Legionella pneumophila str. Paris

50.696

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.696

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.366

100

0.438

Multiple sequence alignment