Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BI282_RS12725 Genome accession   NZ_CP017428
Coordinates   2646606..2647124 (-) Length   172 a.a.
NCBI ID   WP_106421151.1    Uniprot ID   -
Organism   Staphylococcus simulans strain MR3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2638194..2648587 2646606..2647124 within 0


Gene organization within MGE regions


Location: 2638194..2648587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI282_RS12690 (BI282_12600) - 2638194..2638949 (-) 756 WP_106421158.1 ABC transporter ATP-binding protein -
  BI282_RS12695 (BI282_12605) - 2639137..2639841 (+) 705 WP_106421146.1 response regulator transcription factor -
  BI282_RS12700 (BI282_12610) - 2639843..2641231 (+) 1389 WP_106421147.1 ATP-binding protein -
  BI282_RS12705 (BI282_12615) - 2641822..2642253 (-) 432 WP_106421148.1 TetR/AcrR family transcriptional regulator -
  BI282_RS12710 (BI282_12620) - 2642269..2643885 (-) 1617 WP_234427235.1 site-specific integrase -
  BI282_RS12715 (BI282_12625) - 2643878..2645278 (-) 1401 WP_106421149.1 tyrosine-type recombinase/integrase -
  BI282_RS12720 (BI282_12630) - 2645284..2646390 (-) 1107 WP_234427243.1 tyrosine-type recombinase/integrase -
  BI282_RS12725 (BI282_12635) ssbA 2646606..2647124 (-) 519 WP_106421151.1 single-stranded DNA-binding protein Machinery gene
  BI282_RS12730 (BI282_12640) rpsF 2647146..2647442 (-) 297 WP_002480322.1 30S ribosomal protein S6 -
  BI282_RS12735 (BI282_12645) - 2647604..2648587 (-) 984 WP_057510724.1 thermonuclease family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19070.73 Da        Isoelectric Point: 5.1953

>NTDB_id=198051 BI282_RS12725 WP_106421151.1 2646606..2647124(-) (ssbA) [Staphylococcus simulans strain MR3]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVSNYLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQRHGQQSGGNNQFQIYGQNYGGQQQGQNTSSYQNNNSSNAGQSDNPFANTN
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=198051 BI282_RS12725 WP_106421151.1 2646606..2647124(-) (ssbA) [Staphylococcus simulans strain MR3]
ATGATTAACAGAGTTGTATTAGTAGGCCGTTTAACTAAGGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACTCTAGCGGTTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCGGACTTTATTAACTGTGTTGTTT
TTAGAAAACAAGCAGAAAACGTAAGCAATTACTTGTTTAAAGGAAGTCTTGCAGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGACGCCGTATCTTTGTTACTGAAGTTGTATGTGACAGTGTTCAATTCCTTGAACCAAAATC
ACAAAACCAACGTCATGGCCAACAATCTGGCGGTAATAACCAATTCCAGATCTATGGTCAAAACTATGGTGGTCAACAAC
AAGGACAAAATACGTCATCTTATCAAAACAACAATTCATCCAACGCTGGTCAATCAGACAATCCATTCGCAAATACGAAC
GGACCTATTGACATCAGTGACGATGATTTACCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.221

100

0.634
  ssb Latilactobacillus sakei subsp. sakei 23K

56.897

100

0.576
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

63.953

0.372
  ssb Glaesserella parasuis strain SC1401

35.359

100

0.372
  ssb Vibrio cholerae strain A1552

34.831

100

0.36

Multiple sequence alignment