Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BI380_RS20605 Genome accession   NZ_CP017420
Coordinates   4442843..4443409 (+) Length   188 a.a.
NCBI ID   WP_016449346.1    Uniprot ID   -
Organism   Delftia tsuruhatensis strain CM13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4437843..4448409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI380_RS20595 (BI380_20595) uvrA 4438127..4441234 (-) 3108 WP_046241753.1 excinuclease ABC subunit UvrA -
  BI380_RS20600 (BI380_20600) - 4441508..4442683 (+) 1176 WP_070080733.1 MFS transporter -
  BI380_RS20605 (BI380_20605) ssb 4442843..4443409 (+) 567 WP_016449346.1 single-stranded DNA-binding protein Machinery gene
  BI380_RS20610 (BI380_20610) - 4443496..4443993 (+) 498 WP_017406889.1 hypothetical protein -
  BI380_RS20615 (BI380_20615) - 4444320..4445774 (+) 1455 WP_415829731.1 SulP family inorganic anion transporter -
  BI380_RS35345 - 4446171..4446479 (+) 309 WP_223275368.1 hypothetical protein -
  BI380_RS20625 (BI380_20625) - 4446482..4447174 (+) 693 WP_016449342.1 hypothetical protein -
  BI380_RS20630 (BI380_20630) paaE 4447208..4448305 (-) 1098 WP_046240025.1 1,2-phenylacetyl-CoA epoxidase subunit PaaE -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20403.55 Da        Isoelectric Point: 5.9554

>NTDB_id=198014 BI380_RS20605 WP_016449346.1 4442843..4443409(+) (ssb) [Delftia tsuruhatensis strain CM13]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADTMQMLGSRQGGGGGQQGGGYGDEGYGDSGYDAPPQQQQRRPAPAPMAAPAPRQAPA
QRPAPAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=198014 BI380_RS20605 WP_016449346.1 4442843..4443409(+) (ssb) [Delftia tsuruhatensis strain CM13]
ATGGCATCCGTCAACAAGGTCATCATCGTCGGCAACCTCGGGCGCGACCCCGAAATGCGCACCTTCCCGAGTGGCGACCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACGGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGCCTGGCCGAAATCGTGGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGGCCTCCGGCCAGGAACGCTACGCCACCGAAATCCGCGCCGACACCATGCA
GATGCTGGGCAGCCGCCAAGGCGGCGGCGGTGGCCAGCAAGGCGGCGGCTATGGCGATGAAGGCTATGGCGACAGCGGCT
ACGACGCCCCTCCCCAGCAGCAACAGCGCCGCCCGGCCCCTGCCCCCATGGCAGCGCCCGCACCGCGCCAGGCCCCTGCC
CAGCGCCCCGCTCCCGCACCCATGGCACCCCCGCCCCAGCGCGCGGCCTCGGGCTTTGACGACATGGATGACGACATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.333

100

0.553
  ssb Glaesserella parasuis strain SC1401

53.093

100

0.548
  ssb Neisseria gonorrhoeae MS11

46.032

100

0.463
  ssb Neisseria meningitidis MC58

44.974

100

0.452

Multiple sequence alignment