Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BI364_RS15680 Genome accession   NZ_CP017415
Coordinates   3250300..3250980 (+) Length   226 a.a.
NCBI ID   WP_070079533.1    Uniprot ID   A0A1D8IRQ1
Organism   Acidihalobacter yilgarnensis strain F5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3250943..3272209 3250300..3250980 flank -37


Gene organization within MGE regions


Location: 3250300..3272209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI364_RS15680 (BI364_15680) comM 3250300..3250980 (+) 681 WP_070079533.1 magnesium chelatase domain-containing protein Machinery gene
  BI364_RS18100 - 3251349..3251489 (-) 141 WP_156782803.1 hypothetical protein -
  BI364_RS15685 (BI364_15685) - 3251551..3254640 (+) 3090 WP_070079534.1 type I restriction endonuclease subunit R -
  BI364_RS15690 (BI364_15690) - 3254630..3255307 (+) 678 WP_070079535.1 restriction endonuclease subunit S -
  BI364_RS15695 (BI364_15695) - 3255394..3255852 (+) 459 WP_070079536.1 restriction endonuclease subunit S -
  BI364_RS18105 - 3255856..3256695 (+) 840 WP_156782804.1 hypothetical protein -
  BI364_RS15705 (BI364_15705) - 3256704..3257714 (+) 1011 WP_070079538.1 virulence RhuM family protein -
  BI364_RS15710 (BI364_15710) - 3257711..3259327 (+) 1617 WP_070079539.1 type I restriction-modification system subunit M -
  BI364_RS15715 (BI364_15715) - 3260366..3261292 (+) 927 WP_070079540.1 hypothetical protein -
  BI364_RS15720 (BI364_15720) dinB 3261474..3262637 (-) 1164 WP_233279540.1 DNA polymerase IV -
  BI364_RS17670 - 3263121..3263618 (+) 498 WP_083251464.1 hypothetical protein -
  BI364_RS15725 (BI364_15725) - 3264127..3265089 (-) 963 WP_070079542.1 IS5 family transposase -
  BI364_RS17675 - 3266021..3267811 (+) 1791 WP_083251465.1 ThiF family adenylyltransferase -
  BI364_RS17680 - 3267804..3268310 (+) 507 WP_083251466.1 Mov34/MPN/PAD-1 family protein -
  BI364_RS15735 (BI364_15735) - 3268297..3269664 (-) 1368 WP_083251467.1 helix-turn-helix domain-containing protein -
  BI364_RS18815 - 3270190..3270505 (+) 316 Protein_3171 hypothetical protein -
  BI364_RS15745 (BI364_15745) - 3270498..3272153 (-) 1656 WP_070079546.1 recombinase family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24171.92 Da        Isoelectric Point: 6.4932

>NTDB_id=198000 BI364_RS15680 WP_070079533.1 3250300..3250980(+) (comM) [Acidihalobacter yilgarnensis strain F5]
MMSLARVYTRAQLGIDAPEVCVEVHLSNGLPSLSIVGLPEAAVRESKDRVRAAILNSHFEFPARRITVNLAPADLPKEGG
RFDLPIALGILAASGQLPAESLDEIEFIGELALDGHLRGIRGALPAALATRAAGRSLLVPEQCVSEAGLVEGLPLYAANH
LLQVCAHLAGRERLALHRSQPQQIPERWDTDLSDIRGQHQARRALEVAAAGGHNLLMIGPISPILM

Nucleotide


Download         Length: 681 bp        

>NTDB_id=198000 BI364_RS15680 WP_070079533.1 3250300..3250980(+) (comM) [Acidihalobacter yilgarnensis strain F5]
ATGATGTCGCTGGCTCGCGTCTACACTCGTGCGCAACTCGGCATTGACGCGCCCGAGGTTTGCGTTGAAGTACATCTATC
CAATGGCCTGCCTAGCCTGTCCATCGTCGGCTTGCCTGAAGCCGCAGTTCGCGAAAGCAAGGACCGCGTCCGTGCCGCCA
TTCTCAATAGCCACTTCGAATTTCCCGCACGCCGCATCACCGTGAATCTGGCGCCGGCGGACCTGCCCAAAGAAGGTGGA
CGCTTCGATCTGCCCATCGCCCTCGGTATTCTCGCGGCATCGGGCCAGTTACCCGCGGAATCACTCGACGAAATCGAATT
CATCGGCGAACTGGCGCTCGATGGGCATTTACGTGGGATTCGCGGCGCGCTACCCGCCGCACTGGCCACGCGCGCTGCAG
GGCGCTCGCTGCTCGTACCCGAGCAATGCGTGAGCGAGGCTGGACTGGTTGAAGGATTGCCGCTGTACGCCGCCAATCAC
CTGTTGCAGGTCTGCGCGCACCTTGCGGGGCGCGAGCGGCTTGCGCTGCATCGGTCACAGCCTCAGCAGATTCCCGAGCG
ATGGGATACCGACTTGTCCGATATCCGGGGACAACACCAGGCAAGGCGTGCGCTTGAAGTCGCGGCGGCAGGCGGACACA
ACTTGCTGATGATCGGACCTATTAGCCCCATTCTTATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-220)

Subunit ChlI of Mg-chelatase (ChlI)

(22-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D8IRQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.824

97.788

0.575
  comM Vibrio campbellii strain DS40M4

57.078

96.903

0.553
  comM Glaesserella parasuis strain SC1401

54.955

98.23

0.54
  comM Haemophilus influenzae Rd KW20

54.26

98.673

0.535
  comM Legionella pneumophila str. Paris

51.835

96.46

0.5
  comM Legionella pneumophila strain ERS1305867

51.835

96.46

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.088

100

0.403

Multiple sequence alignment