Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BI364_RS14390 Genome accession   NZ_CP017415
Coordinates   2975612..2976967 (+) Length   451 a.a.
NCBI ID   WP_070079336.1    Uniprot ID   A0A1D8IRF8
Organism   Acidihalobacter yilgarnensis strain F5     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2970612..2981967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI364_RS14370 (BI364_14370) sucD 2971655..2972536 (-) 882 WP_070079333.1 succinate--CoA ligase subunit alpha -
  BI364_RS14375 (BI364_14375) sucC 2972533..2973702 (-) 1170 WP_070079334.1 ADP-forming succinate--CoA ligase subunit beta -
  BI364_RS14380 (BI364_14380) - 2973849..2974079 (+) 231 WP_070080101.1 PP0621 family protein -
  BI364_RS14385 (BI364_14385) - 2974083..2975510 (+) 1428 WP_070079335.1 nitrogen regulation protein NR(II) -
  BI364_RS14390 (BI364_14390) pilR 2975612..2976967 (+) 1356 WP_070079336.1 sigma-54 dependent transcriptional regulator Regulator
  BI364_RS19010 (BI364_14395) pilA2 2977153..2977431 (+) 279 WP_083251559.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BI364_RS17625 - 2977365..2977649 (+) 285 WP_197495732.1 pilin -
  BI364_RS14400 (BI364_14400) pilA 2977870..2978340 (+) 471 WP_070079337.1 pilin Machinery gene
  BI364_RS14405 (BI364_14405) - 2978411..2980399 (+) 1989 WP_070079338.1 hypothetical protein -
  BI364_RS14410 (BI364_14410) - 2980392..2981267 (+) 876 WP_070079339.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49879.01 Da        Isoelectric Point: 6.8282

>NTDB_id=197995 BI364_RS14390 WP_070079336.1 2975612..2976967(+) (pilR) [Acidihalobacter yilgarnensis strain F5]
MSTQHVLIVDDEPDIRELLEITLGRMGLETHAAGDLREAGNLLRDARFDLCLTDLRLPDGSGIQLVDYIQQHHPELPVAV
ISAHGTMETAIAALKAGAFDFVAKPVDLERLRALVGSALKLNQENSPQQPDRRRQPLLGNSPAMQGIRDTVAKLARSQAP
IYIHGESGTGKELIARQIHDQGPRRTAPFVPVNCGAIPPELMESEFFGHIKGSFTGATVDRPGLFQTAHGGTLFLDEVAD
LPLAMQVKLLRAIQERRIRPVGANQETPVDVRILSATHKNLADEVAANRFRQDLYFRLNVIELQAPPLRERIEDLPLLAT
HLLERIASRWGHPSLRLADGALHALEQYPFPGNVRELENILERAATLCEGQTLYARDLRLSPPNPAGNASTTSPPPLAVG
EAALDTQLANQQREVIRRALEQTRWNKTQAAEVLGISFRQLRYRLKKLGIE

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=197995 BI364_RS14390 WP_070079336.1 2975612..2976967(+) (pilR) [Acidihalobacter yilgarnensis strain F5]
ATGAGCACCCAGCACGTTCTAATCGTCGACGACGAACCGGATATCCGTGAGCTTCTGGAAATCACCCTGGGGCGCATGGG
TCTTGAAACCCACGCCGCCGGCGACCTCCGCGAAGCCGGCAATCTACTCCGCGACGCGCGCTTTGATCTTTGCCTCACCG
ACCTGCGACTGCCCGATGGCTCTGGCATACAGCTCGTCGATTATATCCAGCAACATCACCCCGAACTGCCCGTTGCCGTC
ATCAGTGCGCACGGCACCATGGAAACGGCCATCGCGGCACTCAAGGCGGGGGCCTTCGATTTTGTAGCCAAGCCTGTCGA
TCTCGAACGACTACGCGCGCTGGTCGGCAGCGCGCTCAAGCTCAACCAGGAAAATTCGCCACAACAACCCGACCGGCGGC
GACAACCCTTGCTCGGCAATTCACCGGCCATGCAGGGCATCCGCGACACGGTCGCCAAGCTGGCGCGCAGTCAGGCTCCG
ATCTACATCCATGGCGAATCCGGCACCGGCAAGGAACTCATCGCCCGTCAGATACACGACCAGGGACCGCGACGCACCGC
GCCCTTCGTGCCCGTCAACTGTGGCGCCATCCCGCCAGAACTGATGGAGAGCGAATTCTTCGGTCATATCAAGGGCAGCT
TCACCGGGGCAACCGTCGATAGACCCGGTCTGTTCCAGACGGCCCATGGCGGCACGCTGTTTCTTGATGAGGTCGCGGAC
CTCCCGCTGGCCATGCAGGTGAAGCTGTTGCGCGCAATCCAGGAACGGCGGATCAGGCCCGTCGGCGCCAACCAGGAAAC
ACCGGTGGATGTGCGCATCCTCAGCGCCACCCATAAAAACCTCGCCGACGAGGTTGCCGCAAACCGATTCCGGCAAGACC
TGTATTTCCGCCTCAACGTGATCGAACTGCAAGCACCGCCTCTGCGCGAACGCATCGAGGACCTCCCCTTACTGGCGACC
CACCTCCTGGAACGTATCGCCTCGCGCTGGGGGCACCCCTCTCTCCGGCTTGCCGATGGTGCCCTGCACGCACTCGAGCA
ATATCCCTTTCCGGGCAATGTCCGCGAACTCGAGAACATACTCGAACGCGCAGCCACGCTATGCGAAGGCCAGACACTCT
ATGCCCGCGATCTGCGACTCTCCCCGCCCAACCCGGCAGGCAATGCCTCAACGACGTCGCCCCCGCCTCTCGCCGTTGGC
GAAGCCGCACTGGATACCCAGCTCGCCAACCAACAGCGGGAAGTCATCCGCCGCGCGCTTGAACAGACCCGCTGGAACAA
GACGCAGGCGGCTGAAGTGCTCGGGATCAGCTTCCGCCAGCTCCGCTACCGCCTGAAGAAACTGGGCATCGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-114)

Sigma-54 interaction domain (Sigma54_activat)

(137-304)

Bacterial regulatory protein, Fis family (HTH_8)

(408-448)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D8IRF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.971

100

0.63
  pilR Acinetobacter baumannii strain A118

49.673

100

0.506
  luxO Vibrio cholerae strain A1552

37.079

98.67

0.366

Multiple sequence alignment