Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   WH25_RS03915 Genome accession   NZ_CP017295
Coordinates   820977..821642 (+) Length   221 a.a.
NCBI ID   WP_046165174.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 815977..826642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS03890 (WH25_03890) - 816143..817546 (+) 1404 WP_046165170.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  WH25_RS03895 (WH25_03895) - 817543..817929 (+) 387 WP_012000099.1 S1 RNA-binding domain-containing protein -
  WH25_RS03900 (WH25_03900) cysK 817964..818893 (-) 930 WP_046165171.1 cysteine synthase A -
  WH25_RS03905 (WH25_03905) - 818991..819623 (-) 633 WP_046165172.1 YigZ family protein -
  WH25_RS03910 (WH25_03910) comFA/cflA 819679..820980 (+) 1302 WP_046165173.1 DEAD/DEAH box helicase Machinery gene
  WH25_RS03915 (WH25_03915) comFC/cflB 820977..821642 (+) 666 WP_046165174.1 ComF family protein Machinery gene
  WH25_RS03920 (WH25_03920) hpf 821727..822269 (+) 543 WP_012000104.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25866.81 Da        Isoelectric Point: 8.4479

>NTDB_id=197409 WH25_RS03915 WP_046165174.1 820977..821642(+) (comFC/cflB) [Streptococcus gordonii strain IE35]
MRQCLLCLSLLEEQLNFIDLLQLKRKENDVCQECLNTFEKIPEEHCPSCYKAGDKNLCQDCQYWQERGLEVAHKSLYTYN
KAMKDYFSRYKFQGDYLLRNVFALSIRKELKKYQSYTILNLPLSESKMKTRGFNQVSGLLEAAQIPYQELLKKKESQTQS
SKSRKERLENTGNFYMIENTKIPQKILLVDDIYTTGATLQDAKVTLFENGAKEIMTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=197409 WH25_RS03915 WP_046165174.1 820977..821642(+) (comFC/cflB) [Streptococcus gordonii strain IE35]
ATGAGACAATGTCTACTCTGCTTATCCCTATTAGAAGAGCAGTTAAATTTTATAGATTTATTACAATTAAAAAGAAAAGA
AAATGACGTTTGTCAAGAATGCTTAAATACCTTCGAAAAAATTCCAGAAGAACATTGTCCAAGCTGTTATAAAGCTGGGG
ACAAAAACTTGTGCCAAGATTGTCAGTACTGGCAGGAAAGAGGGTTAGAAGTGGCTCATAAAAGTTTGTACACTTATAAT
AAGGCTATGAAAGACTATTTTAGTCGTTACAAATTTCAAGGAGATTACCTATTAAGAAATGTGTTTGCCCTAAGTATAAG
AAAAGAATTAAAAAAATACCAAAGTTACACAATTTTAAACCTTCCTTTAAGTGAAAGTAAGATGAAAACAAGAGGATTCA
ATCAAGTGTCTGGATTGCTTGAAGCTGCACAGATACCTTATCAAGAACTATTAAAGAAAAAAGAAAGCCAGACTCAGTCT
AGTAAAAGCAGAAAAGAGAGATTAGAAAACACAGGTAATTTTTATATGATTGAAAATACGAAAATCCCCCAAAAAATTTT
ACTTGTAGATGACATCTATACAACAGGTGCAACCTTACAGGATGCAAAAGTGACATTATTTGAAAACGGAGCGAAAGAAA
TCATGACATTTTCACTAGCAAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

50.685

99.095

0.502
  comFC/cflB Streptococcus mitis NCTC 12261

50.685

99.095

0.502
  comFC/cflB Streptococcus pneumoniae Rx1

50.228

99.095

0.498
  comFC/cflB Streptococcus pneumoniae D39

50.228

99.095

0.498
  comFC/cflB Streptococcus pneumoniae R6

50.228

99.095

0.498
  comFC/cflB Streptococcus mitis SK321

49.772

99.095

0.493

Multiple sequence alignment