Detailed information NTG0197391

Bioinformatically predicted

Overview

• Name: lytF
• Type: Regulator
• Locus tag: WH25_RS00410
• Genome accession: NZ_CP017295
• Coordinates: 90873..92522 (+)
• Length: 549 a.a.
• NCBI ID: WP_046164563.1
• Uniprot ID: -
• Organism: Streptococcus gordonii strain IE35
• Function: cell lysis (predicted from homology) Cell lysis

Genomic Context

Location: 85873..97522

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WH25_RS00380 (WH25_00380)	-	86018..86245 (-)	228	WP_046164557.1	hypothetical protein	-
WH25_RS00385 (WH25_00385)	-	86265..86528 (-)	264	WP_155759325.1	hypothetical protein	-
WH25_RS00390 (WH25_00390)	purK	86530..87621 (-)	1092	WP_046164559.1	5-(carboxyamino)imidazole ribonucleotide synthase	-
WH25_RS00395 (WH25_00395)	purE	87608..88096 (-)	489	WP_046164560.1	5-(carboxyamino)imidazole ribonucleotide mutase	-
WH25_RS00400 (WH25_00400)	-	88116..89309 (-)	1194	WP_046164561.1	ATP-grasp domain-containing protein	-
WH25_RS00405 (WH25_00405)	purD	89369..90628 (-)	1260	WP_046164562.1	phosphoribosylamine--glycine ligase	-
WH25_RS00410 (WH25_00410)	lytF	90873..92522 (+)	1650	WP_046164563.1	GBS Bsp-like repeat-containing protein	Regulator
WH25_RS00415 (WH25_00415)	comB	92641..93999 (-)	1359	WP_046164564.1	competence pheromone export protein ComB	Regulator
WH25_RS00420 (WH25_00420)	comA	94009..96162 (-)	2154	WP_046164565.1	peptide cleavage/export ABC transporter ComA	Regulator
WH25_RS00425 (WH25_00425)	rpsD	96616..97227 (-)	612	WP_008810013.1	30S ribosomal protein S4	-

Sequence

Protein

• Length: 549 a.a.
• Molecular weight: 60368.20 Da
• Isoelectric Point: 9.3857

>NTDB_id=197391 WH25_RS00410 WP_046164563.1 90873..92522(+) (lytF) [Streptococcus gordonii strain IE35]
MKKYKNFLLLSATLLTSLSAPLAAANEQFSPSQLTAMTSEVSVQLEGQTAIVQYQPTAAQEAYTIQHAVWSEEGGQDDIV
WYSANQSTTRIDLSQHKGQGKFHIETYLNVNGIKYHLSSKSVFLNKPVQPAEKTVPEQQDSTSSNNATPQAPAEPKPTNP
APTPAPAPATNRVENPRNSYPKVEERNKSLPPQKVADPKAAPPQAKPNNNKPLQASAARVPAEPVRDSKPLISITNINKE
NGTYTVRVQESPYSKKIKSVQVPIWSTSNQSNLKWYEASKIGNGSFSVQFDIRNHQQIYGNYINHVYITYEDGSRVGYVA
ENVNLPQPAPQPLTPSLQVVHKGQSTYQVILQNSFGDGHILFPIWSDINGQDDLRWYTANSLGNGRYSLDFNANNHIGDG
LYHVHVYRQSGGKVTGVMASNFQVTRPTVAVRKPLNHTSDPSNTYPVGECTWGAKALAPWAGNWWGNGGDWAASARRAGF
RVGATPQVGAIACWTDGGYGHVGVVTHVDSHKRIQIQESNYAGQRYIANFRGWFDPTIAQGTVSYIYPN

Nucleotide

• Length: 1650 bp

>NTDB_id=197391 WH25_RS00410 WP_046164563.1 90873..92522(+) (lytF) [Streptococcus gordonii strain IE35]
ATGAAAAAATACAAAAATTTCTTACTGCTTTCAGCAACCTTGTTGACCTCACTATCCGCTCCCTTAGCTGCAGCGAATGA
ACAGTTTAGCCCATCCCAACTAACGGCTATGACCAGCGAAGTTTCCGTTCAGCTTGAAGGACAAACAGCGATTGTTCAGT
ACCAACCGACCGCTGCGCAAGAAGCTTATACTATCCAACATGCCGTCTGGTCTGAGGAGGGTGGCCAAGACGATATTGTC
TGGTATTCAGCTAATCAAAGCACGACCAGGATTGACTTGTCTCAGCACAAGGGCCAGGGCAAATTTCACATCGAGACTTA
TCTCAATGTGAATGGTATCAAATATCACTTGAGTAGTAAATCGGTCTTTCTAAACAAGCCGGTTCAACCAGCCGAAAAAA
CTGTCCCTGAACAGCAAGACAGCACTTCGTCTAACAATGCCACACCTCAAGCACCGGCTGAGCCAAAACCAACTAACCCA
GCACCTACTCCAGCTCCGGCTCCCGCGACCAATAGAGTTGAAAATCCTCGGAACTCCTATCCAAAAGTCGAAGAGCGAAA
CAAATCTCTTCCTCCTCAAAAGGTAGCTGACCCAAAGGCGGCGCCCCCTCAGGCAAAGCCAAACAACAACAAACCTCTGC
AAGCTTCAGCTGCTAGAGTACCGGCAGAGCCTGTCAGAGACAGCAAACCACTCATCAGTATTACCAACATTAATAAGGAA
AATGGAACCTATACCGTAAGGGTCCAAGAAAGTCCTTATTCCAAGAAAATTAAAAGTGTGCAGGTGCCTATTTGGAGCAC
CTCTAATCAAAGCAATCTTAAATGGTATGAGGCTTCAAAGATAGGTAACGGAAGCTTTTCTGTTCAATTCGATATCCGAA
ATCACCAGCAGATTTACGGCAACTATATCAATCACGTCTACATTACCTATGAAGACGGTAGCCGAGTTGGCTATGTTGCT
GAAAATGTCAATCTGCCTCAGCCAGCACCCCAGCCACTAACTCCGAGTCTGCAAGTGGTCCATAAAGGTCAATCGACCTA
TCAAGTTATCTTACAAAATAGTTTCGGTGACGGCCATATTCTCTTCCCCATCTGGTCAGATATTAATGGCCAAGACGACC
TCCGCTGGTATACAGCCAATTCTCTTGGTAATGGGCGCTATTCATTAGATTTCAACGCCAACAATCATATCGGTGACGGT
CTCTATCATGTCCATGTCTATCGACAATCTGGTGGGAAAGTAACTGGGGTCATGGCCTCTAATTTTCAAGTAACACGCCC
AACGGTAGCTGTGAGAAAGCCTCTTAACCATACAAGCGACCCAAGTAATACCTACCCTGTTGGTGAATGCACATGGGGTG
CCAAGGCTCTCGCTCCTTGGGCAGGAAACTGGTGGGGAAATGGTGGGGACTGGGCAGCCAGTGCTCGCCGAGCAGGATTC
CGTGTAGGAGCCACACCTCAGGTCGGAGCTATTGCCTGCTGGACAGACGGCGGATACGGACATGTCGGTGTCGTCACGCA
TGTTGATTCACATAAGCGTATCCAAATTCAGGAATCCAACTACGCTGGACAGCGCTATATTGCCAATTTCCGTGGCTGGT
TTGACCCAACCATCGCTCAGGGCACGGTTTCCTATATCTACCCAAATTAA

Domains

Predicted by InterproScan.

• GBS Bsp-like repeat (GBS_Bsp-like) (55-112)

• GBS Bsp-like repeat (GBS_Bsp-like) (342-414)

• GBS Bsp-like repeat (GBS_Bsp-like) (234-319)

• CHAP domain (CHAP) (443-520)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
lytF	Streptococcus gordonii str. Challis substr. CH1	97.45	100	0.975
lytF	Streptococcus gordonii strain NCTC7865	95.811	100	0.958