Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   BFO62_RS04855 Genome accession   NZ_CP017257
Coordinates   833775..834248 (+) Length   157 a.a.
NCBI ID   WP_002247808.1    Uniprot ID   -
Organism   Neisseria meningitidis strain COL-201504-11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 828775..839248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFO62_RS04830 (BFO62_04385) dnaB 829221..830627 (+) 1407 WP_002213843.1 replicative DNA helicase -
  BFO62_RS04835 (BFO62_04390) pilH 830936..831613 (+) 678 WP_061701871.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  BFO62_RS04840 (BFO62_04395) pilV 831637..832257 (+) 621 WP_061725124.1 type IV pilus modification protein PilV Machinery gene
  BFO62_RS04845 (BFO62_04400) pilJ 832254..833192 (+) 939 WP_076612512.1 PilW family protein Machinery gene
  BFO62_RS04850 (BFO62_04405) pilK 833171..833770 (+) 600 WP_076612511.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BFO62_RS04855 (BFO62_04410) pilX 833775..834248 (+) 474 WP_002247808.1 PilX family type IV pilin Machinery gene
  BFO62_RS04875 (BFO62_04415) - 835996..836424 (-) 429 Protein_824 AzlC family ABC transporter permease -
  BFO62_RS04880 (BFO62_04420) dut 836567..837019 (+) 453 WP_002220679.1 dUTP diphosphatase -
  BFO62_RS04885 (BFO62_04425) dapC 837095..838282 (+) 1188 WP_076612509.1 succinyldiaminopimelate transaminase -
  BFO62_RS14315 - 838370..838495 (+) 126 Protein_827 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17402.18 Da        Isoelectric Point: 9.7122

>NTDB_id=197001 BFO62_RS04855 WP_002247808.1 833775..834248(+) (pilX) [Neisseria meningitidis strain COL-201504-11]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNTVKQLILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDKEKSRAYSLVGVPKAGTGYTLSVWMNSVGDGYKCRDAASARAYSETLSADAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=197001 BFO62_RS04855 WP_002247808.1 833775..834248(+) (pilX) [Neisseria meningitidis strain COL-201504-11]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATACTGTCAAAC
AGCTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATAAGGAAAAATCAAGGGCATACAGCTTGGTCGG
CGTTCCGAAGGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCCTATTCGGAGACTTTATCCGCAGATGCCGGCTGCGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

91.083

100

0.911
  pilL Neisseria gonorrhoeae MS11

89.172

100

0.892

Multiple sequence alignment