Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   BFO62_RS04850 Genome accession   NZ_CP017257
Coordinates   833171..833770 (+) Length   199 a.a.
NCBI ID   WP_076612511.1    Uniprot ID   -
Organism   Neisseria meningitidis strain COL-201504-11     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 828171..838770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFO62_RS04820 (BFO62_04380) - 828472..829059 (-) 588 WP_002220670.1 superoxide dismutase -
  BFO62_RS04830 (BFO62_04385) dnaB 829221..830627 (+) 1407 WP_002213843.1 replicative DNA helicase -
  BFO62_RS04835 (BFO62_04390) pilH 830936..831613 (+) 678 WP_061701871.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  BFO62_RS04840 (BFO62_04395) pilV 831637..832257 (+) 621 WP_061725124.1 type IV pilus modification protein PilV Machinery gene
  BFO62_RS04845 (BFO62_04400) pilJ 832254..833192 (+) 939 WP_076612512.1 PilW family protein Machinery gene
  BFO62_RS04850 (BFO62_04405) pilK 833171..833770 (+) 600 WP_076612511.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BFO62_RS04855 (BFO62_04410) pilX 833775..834248 (+) 474 WP_002247808.1 PilX family type IV pilin Machinery gene
  BFO62_RS04875 (BFO62_04415) - 835996..836424 (-) 429 Protein_824 AzlC family ABC transporter permease -
  BFO62_RS04880 (BFO62_04420) dut 836567..837019 (+) 453 WP_002220679.1 dUTP diphosphatase -
  BFO62_RS04885 (BFO62_04425) dapC 837095..838282 (+) 1188 WP_076612509.1 succinyldiaminopimelate transaminase -
  BFO62_RS14315 - 838370..838495 (+) 126 Protein_827 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21931.99 Da        Isoelectric Point: 8.4486

>NTDB_id=197000 BFO62_RS04850 WP_076612511.1 833171..833770(+) (pilK) [Neisseria meningitidis strain COL-201504-11]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCEKGLCTAVNMRTNTNNGNEEAFDNIVVQGKPTVEAVKRSCPAKSTGLCIDNKGMKYKKGTRSVSKMPRYI
IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=197000 BFO62_RS04850 WP_076612511.1 833171..833770(+) (pilK) [Neisseria meningitidis strain COL-201504-11]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATATGCGGACAAATACAAATAATGG
TAATGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAAT
CTACAGGCCTGTGCATTGACAATAAAGGGATGAAATATAAGAAAGGCACGAGAAGCGTCAGCAAAATGCCACGTTATATT
ATCGAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGT
GGTCGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

88.177

100

0.899

Multiple sequence alignment