Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   BFO62_RS04835 Genome accession   NZ_CP017257
Coordinates   830936..831613 (+) Length   225 a.a.
NCBI ID   WP_061701871.1    Uniprot ID   A0AB36RUI9
Organism   Neisseria meningitidis strain COL-201504-11     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 825936..836613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFO62_RS14310 - 826620..826727 (+) 108 Protein_814 IS5/IS1182 family transposase -
  BFO62_RS04810 (BFO62_04370) - 826772..827104 (+) 333 WP_002213854.1 hypothetical protein -
  BFO62_RS04815 (BFO62_04375) - 827435..827944 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  BFO62_RS04820 (BFO62_04380) - 828472..829059 (-) 588 WP_002220670.1 superoxide dismutase -
  BFO62_RS04830 (BFO62_04385) dnaB 829221..830627 (+) 1407 WP_002213843.1 replicative DNA helicase -
  BFO62_RS04835 (BFO62_04390) pilH 830936..831613 (+) 678 WP_061701871.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  BFO62_RS04840 (BFO62_04395) pilV 831637..832257 (+) 621 WP_061725124.1 type IV pilus modification protein PilV Machinery gene
  BFO62_RS04845 (BFO62_04400) pilJ 832254..833192 (+) 939 WP_076612512.1 PilW family protein Machinery gene
  BFO62_RS04850 (BFO62_04405) pilK 833171..833770 (+) 600 WP_076612511.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BFO62_RS04855 (BFO62_04410) pilX 833775..834248 (+) 474 WP_002247808.1 PilX family type IV pilin Machinery gene
  BFO62_RS04875 (BFO62_04415) - 835996..836424 (-) 429 Protein_824 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25239.95 Da        Isoelectric Point: 10.2309

>NTDB_id=196997 BFO62_RS04835 WP_061701871.1 830936..831613(+) (pilH) [Neisseria meningitidis strain COL-201504-11]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTPN
NKCDSGKKGQGMLAFGDKNGNKTYDGDTADVLLRSVVLNDDINNKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYTK
DQHLTSKSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=196997 BFO62_RS04835 WP_061701871.1 830936..831613(+) (pilH) [Neisseria meningitidis strain COL-201504-11]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTTGGCGATAAGAATGGCAATAAGACATATGACGGCGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATAATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTACAAGCAAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCGGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

84.722

96

0.813

Multiple sequence alignment