Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   CDH88_RS22045 Genome accession   NZ_CP021840
Coordinates   4396338..4397348 (-) Length   336 a.a.
NCBI ID   WP_000568519.1    Uniprot ID   Q32HA1
Organism   Escherichia coli strain EC974     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4391338..4402348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH88_RS22025 (CDH88_22010) mepM 4392303..4393625 (-) 1323 WP_001184045.1 murein DD-endopeptidase MepM -
  CDH88_RS22030 (CDH88_22015) znuA 4393641..4394573 (-) 933 WP_024226335.1 zinc ABC transporter substrate-binding protein ZnuA -
  CDH88_RS22035 (CDH88_22020) znuC 4394652..4395407 (+) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  CDH88_RS22040 (CDH88_22025) znuB 4395404..4396189 (+) 786 WP_000571478.1 zinc ABC transporter permease subunit ZnuB -
  CDH88_RS22045 (CDH88_22030) ruvB 4396338..4397348 (-) 1011 WP_000568519.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  CDH88_RS22050 (CDH88_22035) ruvA 4397357..4397968 (-) 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
  CDH88_RS22055 (CDH88_22040) yobI 4398107..4398172 (-) 66 WP_010723105.1 stress response small protein YobI -
  CDH88_RS22060 (CDH88_22045) yebB 4398243..4398845 (+) 603 WP_001024929.1 YebB family permuted papain-like enzyme -
  CDH88_RS22065 (CDH88_22050) ruvC 4398847..4399368 (-) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  CDH88_RS22070 (CDH88_22055) yebC 4399403..4400143 (-) 741 WP_000907234.1 YebC/PmpR family DNA-binding transcriptional regulator -
  CDH88_RS22075 (CDH88_22060) nudB 4400172..4400624 (-) 453 WP_001300367.1 dihydroneopterin triphosphate diphosphatase -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37173.77 Da        Isoelectric Point: 4.7818

>NTDB_id=196632 CDH88_RS22045 WP_000568519.1 4396338..4397348(-) (ruvB) [Escherichia coli strain EC974]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=196632 CDH88_RS22045 WP_000568519.1 4396338..4397348(-) (ruvB) [Escherichia coli strain EC974]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTAGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATTTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATTTGGCTGCGATGCTCACTAACCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTTTATCGCCAGTTGTTGAAGAAGTGCTGTACCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGACCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGCGCTCGCGGTACGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTGGCGGCGGCTATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGCGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

53.251

96.131

0.512
  ruvB Helicobacter pylori 26695

52.038

94.94

0.494

Multiple sequence alignment