Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CDL16_RS00105 Genome accession   NZ_CP021775
Coordinates   22893..23981 (+) Length   362 a.a.
NCBI ID   WP_003131371.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Pa58     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 17893..28981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDL16_RS00085 (CDL16_00085) rsmB 18788..20092 (-) 1305 WP_003131368.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  CDL16_RS00090 (CDL16_00090) fmt 20089..21033 (-) 945 WP_003131369.1 methionyl-tRNA formyltransferase -
  CDL16_RS00095 (CDL16_00095) def 21088..21594 (-) 507 WP_003107059.1 peptide deformylase -
  CDL16_RS00100 (CDL16_00100) tsaP 21733..22758 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  CDL16_RS00105 (CDL16_00105) dprA 22893..23981 (+) 1089 WP_003131371.1 DNA-processing protein DprA Machinery gene
  CDL16_RS00110 (CDL16_00110) - 24022..24579 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  CDL16_RS00115 (CDL16_00115) - 24589..25565 (-) 977 Protein_22 NADPH:quinone reductase -
  CDL16_RS00120 (CDL16_00120) hemF 25756..26673 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  CDL16_RS00125 (CDL16_00125) aroE 26731..27555 (+) 825 WP_003097314.1 shikimate dehydrogenase -
  CDL16_RS00130 (CDL16_00130) - 27666..28652 (+) 987 WP_003097316.1 phospholipase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37661.13 Da        Isoelectric Point: 6.6363

>NTDB_id=196377 CDL16_RS00105 WP_003131371.1 22893..23981(+) (dprA) [Pseudomonas aeruginosa strain Pa58]
MKNHSPAELEARLRLHGLPELGPMRFLHLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGTPETLEWPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRCHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=196377 CDL16_RS00105 WP_003131371.1 22893..23981(+) (dprA) [Pseudomonas aeruginosa strain Pa58]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCACTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCTGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCACCCCGGAGACTCTGGAATGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGGTG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCTGG
CGCACGTGGCTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAACCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

43.316

100

0.448
  dprA Vibrio cholerae strain A1552

43.316

100

0.448
  dprA Vibrio campbellii strain DS40M4

43.243

100

0.442
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.69

98.066

0.409
  dprA Legionella pneumophila strain ERS1305867

49.31

80.11

0.395
  dprA Acinetobacter baumannii D1279779

38.462

96.961

0.373
  dprA Neisseria gonorrhoeae strain FA1090

44.554

83.702

0.373
  dprA Acinetobacter baumannii strain A118

38.177

96.961

0.37
  dprA Neisseria gonorrhoeae MS11

44.224

83.702

0.37
  dprA Neisseria meningitidis strain C311

46.021

79.834

0.367
  dprA Neisseria meningitidis MC58

46.021

79.834

0.367

Multiple sequence alignment