Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BFX80_RS17180 Genome accession   NZ_CP017114
Coordinates   4061202..4062740 (-) Length   512 a.a.
NCBI ID   WP_084209516.1    Uniprot ID   -
Organism   Cobetia marina strain JCM 21022     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4056202..4067740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFX80_RS17160 (BFX80_16810) - 4057363..4058373 (+) 1011 WP_084209512.1 alpha/beta hydrolase -
  BFX80_RS17165 (BFX80_16815) - 4058361..4058891 (+) 531 WP_157109506.1 hypothetical protein -
  BFX80_RS17170 (BFX80_16820) - 4058980..4060131 (+) 1152 WP_084209514.1 histidinol-phosphate transaminase -
  BFX80_RS17175 (BFX80_16825) - 4060142..4061173 (+) 1032 WP_084209515.1 DUF4105 domain-containing protein -
  BFX80_RS17180 (BFX80_16830) comM 4061202..4062740 (-) 1539 WP_084209516.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BFX80_RS17905 - 4063093..4063362 (-) 270 WP_157109507.1 hypothetical protein -
  BFX80_RS17185 (BFX80_16835) - 4063889..4064167 (+) 279 WP_205632716.1 hypothetical protein -
  BFX80_RS17190 (BFX80_16840) - 4064253..4064627 (-) 375 WP_084209517.1 accessory factor UbiK family protein -
  BFX80_RS17195 (BFX80_16845) - 4065065..4065403 (+) 339 WP_065392452.1 P-II family nitrogen regulator -
  BFX80_RS17200 (BFX80_16850) - 4065436..4066683 (+) 1248 WP_077379618.1 ammonium transporter -
  BFX80_RS17205 (BFX80_16855) glnK 4066834..4067172 (+) 339 WP_024951507.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54901.21 Da        Isoelectric Point: 7.4754

>NTDB_id=195768 BFX80_RS17180 WP_084209516.1 4061202..4062740(-) (comM) [Cobetia marina strain JCM 21022]
MSLAMLRTRASLGLEAPEVQVEVHLSNGLPGLSIVGLPEAAVKESRERVRSALLNAGFEFPARRITLNLAPADLPKEGGR
FDLPIALGILVASGQVPEEAVAQIECLGELALDGSIRSVTGVLPAALCCRKAGRTLVVPRGNADEAALAEQLDVLSVGHL
LELVAHLLGRERIMPHVCSVTPQARLPEPDLSEVRGQHQARRALEIAAAGGHNLLFAGPPGTGKTMLASRLSGILPPLGE
AEALEVAAVRSVCGMPIMERWGQRPFRAPHHTASGVALVGGGSRPRPGEVSLAHHGVLFLDELAEFDRGVLEVMREPLES
GRILISRASHQRRFPARFQLVAAMNPCPCGYLGDSRRNCSCTPAQIQRYQARLSGPLLDRIDLQVEVPGLPAEELTSATP
GEASDAVRERVLAARARQLARGGLNAHLDTHALEAACQLEDGERQWLAGVLSRLNLSARAYHRVLRVALTLSDLIAQDGV
QRPQLMEAIGYRQLDRMMGRDPARPGAEQRSA

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=195768 BFX80_RS17180 WP_084209516.1 4061202..4062740(-) (comM) [Cobetia marina strain JCM 21022]
ATGTCATTGGCAATGTTGCGCACGCGCGCATCTCTTGGTCTTGAAGCTCCGGAGGTGCAGGTAGAGGTACACCTCTCCAA
CGGGCTGCCGGGGCTCTCCATCGTTGGCTTGCCGGAAGCGGCGGTGAAGGAAAGTCGTGAGCGAGTGCGCAGCGCATTGC
TCAATGCAGGCTTCGAGTTTCCAGCGCGCCGAATCACCCTCAATCTGGCCCCGGCTGACCTGCCCAAGGAGGGTGGGCGC
TTTGATCTGCCGATCGCACTGGGCATCCTGGTGGCATCCGGTCAGGTGCCGGAAGAGGCCGTGGCGCAGATCGAGTGTCT
GGGCGAGTTGGCACTCGATGGCAGCATTCGCTCCGTTACGGGCGTGCTGCCTGCTGCGCTCTGCTGTCGCAAGGCCGGGC
GCACCCTGGTGGTGCCGCGTGGCAATGCCGATGAGGCCGCGCTGGCGGAACAGCTGGATGTGCTGTCCGTGGGCCATCTG
CTGGAGTTGGTGGCGCACCTTCTCGGGCGTGAGAGGATCATGCCGCATGTCTGTTCCGTCACTCCTCAGGCGCGACTCCC
GGAGCCGGACCTGAGCGAGGTGCGTGGCCAGCATCAGGCGCGGCGTGCGCTGGAGATTGCCGCTGCGGGAGGCCACAACC
TGCTGTTCGCGGGGCCGCCGGGTACGGGCAAGACGATGCTGGCCAGTCGCCTCTCCGGCATTCTGCCGCCGCTGGGAGAA
GCCGAGGCCCTGGAAGTCGCGGCGGTACGCTCGGTCTGCGGGATGCCGATCATGGAGCGCTGGGGCCAGCGGCCCTTCCG
GGCGCCGCATCATACCGCCAGTGGTGTCGCGCTGGTCGGGGGTGGCTCCAGGCCGCGTCCGGGAGAGGTGTCGCTGGCCC
ATCATGGCGTGCTGTTTCTGGACGAGCTGGCGGAATTTGATCGTGGTGTACTGGAAGTGATGCGTGAGCCGCTGGAGAGC
GGTCGCATCCTCATCTCGCGTGCCAGCCATCAGCGGCGCTTTCCGGCACGTTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCGTGCGGCTATCTTGGTGACAGCCGTCGCAACTGCAGTTGCACGCCGGCCCAGATCCAGCGCTATCAGGCGCGCCTAT
CTGGCCCGCTGCTGGACCGTATCGATCTGCAGGTCGAGGTACCGGGACTGCCTGCTGAGGAGCTGACGTCCGCGACCCCC
GGTGAGGCCTCGGACGCAGTGCGCGAACGGGTGCTGGCAGCCCGCGCTCGTCAATTGGCCCGCGGCGGGCTCAATGCCCA
TCTCGACACCCATGCCCTGGAAGCCGCCTGCCAGCTGGAGGACGGCGAGCGTCAGTGGCTGGCCGGCGTGCTGTCGCGTC
TCAATCTCTCGGCGCGTGCCTATCACCGGGTATTGCGTGTCGCGCTGACGTTGAGCGATCTCATTGCGCAGGATGGCGTG
CAGCGGCCCCAGCTGATGGAAGCCATCGGCTATCGTCAGCTGGACCGCATGATGGGGAGAGACCCGGCCCGCCCGGGAGC
GGAACAACGCAGCGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.89

97.852

0.537
  comM Vibrio campbellii strain DS40M4

54.382

98.047

0.533
  comM Glaesserella parasuis strain SC1401

53.346

99.219

0.529
  comM Haemophilus influenzae Rd KW20

52.456

99.414

0.521
  comM Legionella pneumophila str. Paris

51.085

99.023

0.506
  comM Legionella pneumophila strain ERS1305867

51.085

99.023

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.363

96.875

0.439

Multiple sequence alignment