Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BG483_RS30310 Genome accession   NZ_CP017099
Coordinates   6330638..6332131 (+) Length   497 a.a.
NCBI ID   WP_023088684.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DN1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 6300252..6349393 6330638..6332131 within 0


Gene organization within MGE regions


Location: 6300252..6349393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG483_RS30160 (BG483_29185) algZ 6300374..6301450 (-) 1077 WP_003096404.1 alginate biosynthesis two-component system sensor histidine kinase AlgZ -
  BG483_RS30165 (BG483_29190) argH 6301675..6303069 (+) 1395 WP_003161177.1 argininosuccinate lyase -
  BG483_RS34330 (BG483_29195) - 6303213..6303836 (-) 624 WP_019485038.1 hypothetical protein -
  BG483_RS30175 (BG483_29200) - 6304415..6307684 (-) 3270 WP_021263162.1 hypothetical protein -
  BG483_RS30180 (BG483_29205) - 6307681..6309756 (-) 2076 WP_023101716.1 type VI secretion system tip protein VgrG -
  BG483_RS30185 (BG483_29210) - 6309956..6310474 (-) 519 WP_003083317.1 Hcp family type VI secretion system effector -
  BG483_RS30190 (BG483_29215) - 6310767..6311747 (-) 981 WP_003096411.1 magnesium transporter CorA family protein -
  BG483_RS30195 (BG483_29220) - 6311849..6312124 (+) 276 WP_003114340.1 hypothetical protein -
  BG483_RS30200 (BG483_29225) - 6312257..6313024 (+) 768 WP_023101717.1 substrate-binding periplasmic protein -
  BG483_RS30205 (BG483_29230) - 6313067..6313300 (+) 234 WP_003096418.1 TIGR02647 family protein -
  BG483_RS30210 (BG483_29235) - 6313449..6316301 (+) 2853 WP_021264547.1 class I adenylate cyclase -
  BG483_RS30215 (BG483_29240) - 6316342..6317040 (+) 699 WP_003096422.1 glycine-rich domain-containing protein -
  BG483_RS30220 (BG483_29245) rnk 6317084..6317488 (-) 405 WP_003096424.1 nucleoside diphosphate kinase regulator -
  BG483_RS30225 - 6317624..6317833 (-) 210 WP_003161172.1 DUF1289 domain-containing protein -
  BG483_RS30230 (BG483_29250) cyaY 6317811..6318146 (-) 336 WP_021264549.1 iron donor protein CyaY -
  BG483_RS30235 (BG483_29255) lptM 6318400..6318540 (+) 141 WP_003096430.1 LPS translocon maturation chaperone LptM -
  BG483_RS30240 (BG483_29260) lysA 6318549..6319796 (+) 1248 WP_003096431.1 diaminopimelate decarboxylase -
  BG483_RS30245 (BG483_29265) dapF 6319807..6320637 (+) 831 WP_003098223.1 diaminopimelate epimerase -
  BG483_RS30250 (BG483_29270) - 6320668..6321369 (+) 702 WP_003096433.1 DUF484 family protein -
  BG483_RS30255 (BG483_29275) xerC 6321389..6322300 (+) 912 WP_003096434.1 tyrosine recombinase XerC -
  BG483_RS30260 (BG483_29280) - 6322297..6322995 (+) 699 WP_003096435.1 HAD family hydrolase -
  BG483_RS30265 (BG483_29285) - 6323026..6324195 (-) 1170 WP_023101718.1 MFS transporter -
  BG483_RS30270 (BG483_29290) - 6324358..6325734 (+) 1377 WP_021263164.1 PLP-dependent aminotransferase family protein -
  BG483_RS30275 (BG483_29295) - 6325759..6326673 (-) 915 WP_003136191.1 fimbrial protein -
  BG483_RS30285 (BG483_29305) sutA 6327110..6327427 (-) 318 WP_003096440.1 transcriptional regulator SutA -
  BG483_RS30290 (BG483_29310) - 6327505..6327930 (-) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  BG483_RS30295 (BG483_29315) - 6328191..6329519 (-) 1329 WP_003109815.1 ammonium transporter -
  BG483_RS30300 (BG483_29320) glnK 6329559..6329897 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  BG483_RS30305 (BG483_29325) - 6330337..6330597 (+) 261 WP_003096478.1 accessory factor UbiK family protein -
  BG483_RS30310 (BG483_29330) comM 6330638..6332131 (+) 1494 WP_023088684.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BG483_RS30315 (BG483_29335) betT 6332256..6334241 (+) 1986 WP_003096496.1 choline BCCT transporter BetT -
  BG483_RS30320 (BG483_29340) pchP 6334284..6335333 (-) 1050 WP_021263167.1 phosphorylcholine phosphatase -
  BG483_RS30325 (BG483_29345) - 6335484..6336401 (-) 918 WP_021263168.1 LysR substrate-binding domain-containing protein -
  BG483_RS30330 (BG483_29350) - 6336550..6338016 (+) 1467 WP_003114349.1 NorM family multidrug efflux MATE transporter -
  BG483_RS30335 (BG483_29355) - 6337928..6339604 (-) 1677 WP_023101719.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  BG483_RS30340 (BG483_29360) rep 6339792..6341801 (+) 2010 WP_003110454.1 DNA helicase Rep -
  BG483_RS30345 (BG483_29365) - 6341935..6343653 (+) 1719 WP_021263170.1 thiamine pyrophosphate-dependent enzyme -
  BG483_RS30350 (BG483_29370) - 6343817..6344389 (+) 573 WP_003110452.1 xanthine phosphoribosyltransferase -
  BG483_RS30355 (BG483_29375) - 6344397..6346256 (-) 1860 WP_073665381.1 acetyl-CoA hydrolase/transferase C-terminal domain-containing protein -
  BG483_RS30360 (BG483_29380) - 6346466..6346894 (-) 429 WP_003096511.1 c-type cytochrome -
  BG483_RS30365 (BG483_29385) - 6347098..6347646 (-) 549 WP_003096513.1 cupin domain-containing protein -
  BG483_RS30370 (BG483_29390) alr 6347797..6348870 (-) 1074 WP_021263171.1 alanine racemase -
  BG483_RS30375 (BG483_29395) - 6348961..6349314 (-) 354 WP_003098273.1 RidA family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53052.95 Da        Isoelectric Point: 7.9587

>NTDB_id=195588 BG483_RS30310 WP_023088684.1 6330638..6332131(+) (comM) [Pseudomonas aeruginosa strain DN1]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLPPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRATTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=195588 BG483_RS30310 WP_023088684.1 6330638..6332131(+) (comM) [Pseudomonas aeruginosa strain DN1]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTACCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCCGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAAGCCCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTACTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGCGGCTACCTGGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACTGCCGAGGTCAGCGAACGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGATCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAACGACCTCCACGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.653

99.799

0.565
  comM Haemophilus influenzae Rd KW20

55.206

100

0.565
  comM Vibrio cholerae strain A1552

56.25

99.799

0.561
  comM Glaesserella parasuis strain SC1401

55.09

100

0.555
  comM Legionella pneumophila str. Paris

50.1

100

0.503
  comM Legionella pneumophila strain ERS1305867

50.1

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.957

100

0.469

Multiple sequence alignment