Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   CCD88_RS00835 Genome accession   NZ_CP021724
Coordinates   161595..161876 (+) Length   93 a.a.
NCBI ID   WP_002214428.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 12-330     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 156595..166876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD88_RS00805 (CCD88_00840) - 158148..158411 (+) 264 WP_002234239.1 hypothetical protein -
  CCD88_RS00810 (CCD88_00850) - 158706..159713 (-) 1008 WP_149315874.1 IS5 family transposase -
  CCD88_RS12325 - 160158..160361 (+) 204 WP_002261355.1 hypothetical protein -
  CCD88_RS00825 (CCD88_00865) - 160925..161383 (+) 459 WP_002214429.1 hypothetical protein -
  CCD88_RS00830 (CCD88_00870) - 161382..161516 (+) 135 Protein_136 IS1595 family transposase -
  CCD88_RS00835 (CCD88_00875) comA 161595..161876 (+) 282 WP_002214428.1 ATP-binding cassette domain-containing protein Regulator
  CCD88_RS00840 (CCD88_00880) - 161897..163123 (-) 1227 WP_002219719.1 YihY family inner membrane protein -
  CCD88_RS12715 - 163278..163464 (+) 187 Protein_139 NAD(P)H-quinone oxidoreductase -
  CCD88_RS00850 (CCD88_00890) queC 163668..164327 (+) 660 WP_002222914.1 7-cyano-7-deazaguanine synthase QueC -
  CCD88_RS00855 (CCD88_00895) - 164355..164873 (+) 519 WP_002214425.1 DUF1543 domain-containing protein -
  CCD88_RS00860 (CCD88_00900) queD 164880..165302 (+) 423 WP_002229103.1 6-carboxytetrahydropterin synthase QueD -
  CCD88_RS00865 (CCD88_00905) - 165411..165767 (+) 357 WP_002259854.1 hypothetical protein -
  CCD88_RS12720 - 165787..165912 (+) 126 WP_002234645.1 hypothetical protein -
  CCD88_RS00870 (CCD88_00910) - 166017..166388 (+) 372 WP_002229096.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10070.73 Da        Isoelectric Point: 6.7158

>NTDB_id=195306 CCD88_RS00835 WP_002214428.1 161595..161876(+) (comA) [Neisseria meningitidis strain 12-330]
MIHEEISAMPMGYETLIGDMGSALSGGQKQRIVLARALYCEPKILFLDAATSHLDIANEKAVNANLNGLSIIKIMAAHRK
ETVESADRKMSLG

Nucleotide


Download         Length: 282 bp        

>NTDB_id=195306 CCD88_RS00835 WP_002214428.1 161595..161876(+) (comA) [Neisseria meningitidis strain 12-330]
ATGATTCACGAAGAAATCTCCGCCATGCCTATGGGCTATGAAACCTTGATCGGCGATATGGGCAGCGCACTGTCAGGCGG
ACAAAAACAACGCATCGTATTGGCGCGGGCCTTATATTGCGAACCGAAAATCCTATTTTTAGATGCAGCGACCAGCCATT
TGGATATTGCCAATGAAAAAGCAGTCAATGCAAACTTGAATGGCTTGTCTATCATAAAAATTATGGCGGCACACAGAAAG
GAAACGGTGGAATCAGCAGATAGGAAAATGTCTTTAGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(14-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

45.055

97.849

0.441
  comA/nlmT Streptococcus mutans UA159

45.977

93.548

0.43
  comA Streptococcus pneumoniae Rx1

43.956

97.849

0.43
  comA Streptococcus pneumoniae D39

43.956

97.849

0.43
  comA Streptococcus pneumoniae R6

43.956

97.849

0.43
  comA Streptococcus pneumoniae TIGR4

43.956

97.849

0.43
  comA Streptococcus mitis NCTC 12261

43.956

97.849

0.43
  comA Streptococcus gordonii str. Challis substr. CH1

42.857

97.849

0.419