Detailed information NTG0195034

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AM398_RS08520
• Genome accession: NZ_CP021691
• Coordinates: 1654387..1655379 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AR_0151
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1649387..1660379

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AM398_RS08490 (AM398_08430)	ispD	1649448..1650158 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AM398_RS08495 (AM398_08435)	ispF	1650158..1650637 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AM398_RS08500 (AM398_08440)	truD	1650634..1651683 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AM398_RS08505 (AM398_08445)	surE	1651664..1652425 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AM398_RS08510 (AM398_08450)	pcm	1652419..1653045 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AM398_RS08515 (AM398_08455)	nlpD	1653230..1654324 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AM398_RS08520 (AM398_08460)	rpoS	1654387..1655379 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AM398_RS08525 (AM398_08465)	ygbN	1655473..1656837 (-)	1365	WP_000104441.1	GntP family transporter	-
AM398_RS08530 (AM398_08470)	ygbM	1656926..1657702 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
AM398_RS08535 (AM398_08475)	ygbL	1657707..1658345 (-)	639	WP_001278994.1	aldolase	-
AM398_RS08540 (AM398_08480)	otnK	1658342..1659604 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=195034 AM398_RS08520 WP_000081550.1 1654387..1655379(+) (rpoS) [Escherichia coli strain AR_0151]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=195034 AM398_RS08520 WP_000081550.1 1654387..1655379(+) (rpoS) [Escherichia coli strain AR_0151]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715