Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BGK56_RS14810 Genome accession   NZ_CP017054
Coordinates   3193261..3194787 (-) Length   508 a.a.
NCBI ID   WP_004915428.1    Uniprot ID   A0A140NMR7
Organism   Providencia stuartii strain BE2467     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3188261..3199787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGK56_RS14795 (BGK56_14490) - 3190741..3191536 (-) 796 Protein_2867 transposase -
  BGK56_RS14800 (BGK56_14495) hdfR 3191781..3192626 (-) 846 WP_004915423.1 HTH-type transcriptional regulator HdfR -
  BGK56_RS14805 (BGK56_14500) - 3192738..3193076 (+) 339 WP_004915426.1 DUF413 domain-containing protein -
  BGK56_RS14810 (BGK56_14505) comM 3193261..3194787 (-) 1527 WP_004915428.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BGK56_RS14815 ilvL 3195267..3195368 (+) 102 WP_071599630.1 ilv operon leader peptide -
  BGK56_RS14820 (BGK56_14510) ilvG 3195502..3197148 (+) 1647 WP_072502686.1 acetolactate synthase 2 catalytic subunit -
  BGK56_RS14825 (BGK56_14515) ilvM 3197145..3197414 (+) 270 WP_004915433.1 acetolactate synthase 2 small subunit -
  BGK56_RS14830 (BGK56_14520) - 3197427..3198353 (+) 927 WP_004915437.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55554.29 Da        Isoelectric Point: 8.7576

>NTDB_id=194839 BGK56_RS14810 WP_004915428.1 3193261..3194787(-) (comM) [Providencia stuartii strain BE2467]
MALAIVYTRASIGMNAPLVTVEAHISNGLPGLTLVGLPETAVKESRDRVRSALLNSGFEFPAKKMTINLAPADLPKEGGR
YDLAIAIAILASSGQVPTKILHQYEFLGELALSGHIRHVNGAIPAALAALTQKRQLVLSSENQYELNLLPDNSVKFAGTL
LELCHFLYEKMTLSGNFHPTEIPEPPICDGNISDIIGQEQGKRALEICASGGHNLLLLGPPGTGKTMLASRLKTLLPSLT
PQEALEVASIHSLCHSSDLTSPWPPRPFRAPHHSASMAALIGGGSLPKPGEISLAHNGILFLDELPEFSRSVLDALREPL
ESRQVIISRAKAKVCFPANFQLIAALNPSPTGQYQGDYCRSSSTKILRYLSRVSGPFLDRFDLSIEIPLLPLGTLSHQQY
QSENSEQIRARVILAREIQMKRMGKLNSQLTARETTNLCQLTSKDSLFLEHALNKLGLSIRAWHRILRVARTIADLQNTN
NIEKPHLLEALGYRAMDKLLLHLQKQVS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=194839 BGK56_RS14810 WP_004915428.1 3193261..3194787(-) (comM) [Providencia stuartii strain BE2467]
ATGGCATTAGCAATTGTGTATACAAGAGCATCGATAGGAATGAATGCGCCACTGGTTACTGTTGAAGCACATATTAGTAA
TGGGCTACCTGGATTGACACTTGTAGGTTTACCTGAAACGGCTGTAAAAGAATCGAGAGATAGAGTACGGAGCGCATTAT
TAAACAGCGGTTTTGAATTCCCTGCAAAAAAAATGACGATTAACTTAGCCCCTGCCGATCTCCCGAAAGAAGGGGGACGT
TACGATCTTGCGATAGCAATCGCTATCTTAGCGTCATCAGGCCAAGTGCCTACAAAAATACTTCATCAGTATGAATTTCT
CGGTGAACTCGCTTTGTCTGGTCATATTCGCCATGTAAATGGTGCTATCCCTGCCGCACTCGCGGCATTAACACAAAAAA
GGCAACTCGTTCTTTCATCTGAAAATCAATATGAGCTGAATTTATTACCTGATAATAGTGTTAAGTTTGCAGGAACATTA
TTAGAACTTTGTCATTTTTTATACGAGAAAATGACATTATCAGGTAATTTCCATCCGACCGAAATCCCTGAGCCCCCCAT
TTGCGACGGGAATATTAGCGATATTATTGGACAAGAGCAGGGAAAAAGAGCGTTAGAGATCTGTGCAAGTGGTGGGCACA
ACTTATTGTTATTAGGCCCTCCTGGCACAGGAAAAACGATGCTAGCAAGTCGCCTAAAAACATTACTACCGTCCCTAACG
CCACAGGAAGCCCTAGAAGTCGCCTCTATACATAGCCTATGCCATTCAAGCGATTTAACTTCTCCTTGGCCTCCTAGGCC
CTTTAGAGCTCCTCACCATAGCGCGTCAATGGCAGCACTCATTGGTGGAGGGAGCCTTCCTAAACCCGGTGAAATATCAT
TAGCCCATAATGGCATTTTATTTCTGGATGAATTGCCTGAGTTTAGCCGCTCTGTACTTGACGCATTACGTGAGCCACTT
GAATCAAGGCAAGTTATTATTTCCCGCGCTAAAGCAAAAGTGTGTTTCCCAGCCAACTTTCAACTCATCGCCGCACTGAA
CCCAAGCCCTACAGGCCAATATCAAGGTGATTACTGCCGAAGCTCCTCCACGAAAATCTTACGCTACTTATCACGCGTTT
CAGGTCCTTTTCTTGATCGATTTGATCTGTCTATTGAAATACCGCTGCTTCCGTTGGGTACACTCAGTCATCAACAGTAT
CAAAGCGAAAATAGTGAGCAAATCCGCGCTAGAGTCATACTTGCAAGAGAGATACAAATGAAAAGAATGGGGAAACTCAA
TAGCCAATTAACCGCCAGAGAAACGACAAACCTATGCCAACTCACATCCAAAGATTCACTTTTTTTGGAGCATGCCTTAA
ACAAACTTGGGTTATCGATACGTGCTTGGCATCGCATTTTAAGAGTCGCTCGAACTATTGCCGACTTACAAAATACCAAT
AATATCGAAAAACCCCATCTTCTCGAAGCTCTCGGTTATAGAGCGATGGATAAGTTATTGCTTCATTTGCAAAAACAAGT
AAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A140NMR7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.672

99.606

0.604
  comM Glaesserella parasuis strain SC1401

60.314

100

0.604
  comM Haemophilus influenzae Rd KW20

59.883

100

0.602
  comM Vibrio campbellii strain DS40M4

59.055

100

0.591
  comM Legionella pneumophila str. Paris

48.104

98.622

0.474
  comM Legionella pneumophila strain ERS1305867

48.104

98.622

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.902

100

0.451

Multiple sequence alignment