Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BGI51_RS05665 Genome accession   NZ_CP017024
Coordinates   1218977..1220467 (+) Length   496 a.a.
NCBI ID   WP_187980538.1    Uniprot ID   -
Organism   Pseudomonas oryzihabitans strain KNF2016     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1213977..1225467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGI51_RS05630 (BGI51_05575) - 1214475..1214687 (+) 213 WP_133861995.1 hypothetical protein -
  BGI51_RS05635 (BGI51_05580) - 1214899..1215261 (+) 363 WP_252977214.1 hypothetical protein -
  BGI51_RS05640 (BGI51_05585) sutA 1215497..1215829 (-) 333 WP_133861997.1 transcriptional regulator SutA -
  BGI51_RS05645 (BGI51_05590) - 1215901..1216320 (-) 420 WP_007159806.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  BGI51_RS05650 (BGI51_05595) - 1216493..1217833 (-) 1341 WP_133861998.1 ammonium transporter -
  BGI51_RS05655 (BGI51_05600) glnK 1217882..1218220 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  BGI51_RS05660 (BGI51_05605) - 1218614..1218913 (+) 300 WP_187980537.1 accessory factor UbiK family protein -
  BGI51_RS05665 (BGI51_05610) comM 1218977..1220467 (+) 1491 WP_187980538.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BGI51_RS05670 (BGI51_05615) - 1220464..1220655 (-) 192 WP_027597468.1 hypothetical protein -
  BGI51_RS05675 (BGI51_05620) - 1220783..1222753 (-) 1971 WP_187980539.1 methyl-accepting chemotaxis protein -
  BGI51_RS05680 (BGI51_05625) - 1222886..1223841 (-) 956 Protein_1109 LysR substrate-binding domain-containing protein -
  BGI51_RS05685 (BGI51_05630) - 1223950..1225353 (+) 1404 WP_187980540.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52603.67 Da        Isoelectric Point: 8.4098

>NTDB_id=194578 BGI51_RS05665 WP_187980538.1 1218977..1220467(+) (comM) [Pseudomonas oryzihabitans strain KNF2016]
MSLALVHTRAQVGVEAPPVLVEAHLANGLPALTLVGLPETAVREAKDRVRSAILNAGFEFPSRRITLNLAPADLPKDGGR
FDLALAIGILAASGQLPTPGLDGYECLGELALSGAVRAVRGVLPAALAARAAGRILVVPRANAEEACLASGLRVLAVDHL
LEFAGHLSGQAVLAPYQPSGLLRTPLPYPDLAEVQGQQAAKRALVVGAAGAHNLLLAGPPGTGKTLLASRLPGLLPPLDE
EEALQVAAIHSVAGPEPLEHWPQRPFRQPHHSASGPALVGGGSRPGPGEITLAHRGVLFLDELPEFDRKVLEVLREPLES
GEIVIARARERVRFPARFQLVAAMNPCPCGYLGDPSGRCRCSPEQIQRYRGKLSGPLLDRIDLHLTVAREHLRLGASAAN
ELTTAEAARQVADARALQLARQGRPNALLGLDQLHQVCALSKADQRWLEGAGERLNLSLRALHRVVKVARTLADLAGQAE
IQRPQLAEALQYRASH

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=194578 BGI51_RS05665 WP_187980538.1 1218977..1220467(+) (comM) [Pseudomonas oryzihabitans strain KNF2016]
ATGTCGCTTGCCCTCGTTCATACCCGCGCCCAGGTGGGCGTGGAAGCGCCGCCGGTATTGGTCGAGGCGCACCTGGCCAA
TGGCCTGCCCGCCCTCACCCTGGTCGGCCTGCCGGAAACCGCCGTCCGCGAAGCCAAGGATCGGGTGCGCAGCGCCATCC
TCAATGCCGGCTTCGAATTCCCCAGTCGTCGCATCACCCTCAATCTCGCGCCCGCCGACCTGCCCAAGGACGGTGGTCGC
TTCGACCTCGCCCTGGCCATCGGCATCCTCGCCGCCAGCGGACAGCTACCGACGCCGGGCCTCGACGGCTATGAATGCCT
GGGTGAGCTGGCCCTGTCGGGCGCGGTGCGGGCGGTGCGCGGCGTGCTGCCTGCGGCGCTGGCGGCCCGAGCCGCCGGCC
GCATCCTGGTGGTGCCCCGCGCCAACGCCGAGGAAGCCTGCCTGGCCAGTGGCCTCAGGGTGCTGGCGGTCGATCACCTG
CTGGAGTTCGCCGGTCACCTGAGTGGCCAGGCCGTGCTGGCCCCCTATCAGCCCAGCGGCCTGCTGCGGACCCCATTGCC
CTATCCCGATCTCGCCGAGGTGCAGGGCCAGCAGGCGGCCAAGCGCGCCCTGGTGGTGGGCGCGGCGGGTGCCCACAATC
TCCTGCTGGCCGGTCCACCGGGAACCGGCAAGACCCTGCTCGCCAGTCGCCTGCCAGGGCTGCTGCCGCCCCTGGATGAA
GAAGAGGCGCTGCAGGTGGCCGCCATCCATTCGGTGGCCGGCCCCGAGCCGCTGGAACACTGGCCGCAGAGACCCTTTCG
CCAGCCGCATCATTCGGCGTCTGGTCCAGCGCTGGTGGGCGGCGGCAGCCGACCCGGTCCCGGCGAGATCACCCTGGCCC
ACCGCGGCGTGCTGTTTCTCGACGAGTTGCCGGAATTCGATCGCAAGGTACTGGAAGTGCTGCGCGAGCCCCTGGAGAGC
GGCGAAATCGTCATCGCCCGGGCGCGGGAACGGGTACGCTTTCCGGCCCGCTTCCAGCTGGTGGCGGCGATGAATCCCTG
TCCCTGCGGCTACCTGGGTGACCCCAGCGGCCGCTGCCGCTGCAGCCCGGAGCAGATTCAGCGCTATCGCGGCAAGCTGT
CCGGTCCGCTGCTGGACCGTATCGACCTGCACCTGACGGTAGCCCGCGAGCACCTGCGGCTGGGCGCCTCAGCGGCCAAT
GAGCTCACCACGGCGGAGGCCGCGCGCCAGGTGGCCGACGCCCGCGCCCTCCAGCTGGCGCGCCAGGGGCGACCCAACGC
CCTGCTCGGCCTCGATCAACTGCACCAGGTCTGCGCCCTGAGCAAGGCCGATCAGCGTTGGCTGGAGGGCGCGGGCGAAC
GCCTGAATCTGTCCCTGCGCGCCCTGCACCGGGTGGTCAAGGTGGCCCGCACCCTGGCCGATCTCGCCGGCCAGGCCGAG
ATCCAGCGGCCACAGCTGGCGGAAGCGCTGCAGTATCGGGCGAGTCACTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.048

100

0.56
  comM Vibrio campbellii strain DS40M4

56.048

100

0.56
  comM Glaesserella parasuis strain SC1401

53.785

100

0.544
  comM Haemophilus influenzae Rd KW20

52.789

100

0.534
  comM Legionella pneumophila str. Paris

48.805

100

0.494
  comM Legionella pneumophila strain ERS1305867

48.805

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.752

100

0.456

Multiple sequence alignment