Detailed information NTG0194575

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: BGI51_RS04070
• Genome accession: NZ_CP017024
• Coordinates: 879168..880232 (-)
• Length: 354 a.a.
• NCBI ID: WP_133861494.1
• Uniprot ID: -
• Organism: Pseudomonas oryzihabitans strain KNF2016
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 874168..885232

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BGI51_RS04045 (BGI51_04000)	aroK	874644..875162 (-)	519	WP_133861489.1	shikimate kinase AroK	-
BGI51_RS04050 (BGI51_04005)	pilQ	875168..877393 (-)	2226	WP_187980378.1	type IV pilus secretin PilQ	Machinery gene
BGI51_RS04055 (BGI51_04010)	-	877412..877930 (-)	519	WP_133861491.1	pilus assembly protein PilP	-
BGI51_RS04060 (BGI51_04015)	pilO	877927..878580 (-)	654	WP_187980379.1	type 4a pilus biogenesis protein PilO	-
BGI51_RS04065 (BGI51_04020)	-	878577..879167 (-)	591	WP_158893530.1	PilN domain-containing protein	-
BGI51_RS04070 (BGI51_04025)	comM	879168..880232 (-)	1065	WP_133861494.1	pilus assembly protein PilM	Machinery gene
BGI51_RS04075 (BGI51_04030)	-	880400..882820 (+)	2421	WP_187980380.1	penicillin-binding protein 1A	-
BGI51_RS04080 (BGI51_04035)	-	882873..884141 (-)	1269	WP_133861496.1	malic enzyme-like NAD(P)-binding protein	-
BGI51_RS04085 (BGI51_04040)	-	884254..885081 (-)	828	WP_187980381.1	thermonuclease family protein	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37797.17 Da
• Isoelectric Point: 4.6278

>NTDB_id=194575 BGI51_RS04070 WP_133861494.1 879168..880232(-) (comM) [Pseudomonas oryzihabitans strain KNF2016]
MLGLFRKKANTLLGIDVSSTSVKLIELSRSGGRYRVEAYAVEPLPANAVVEKNIAELEGVGLAIGRVLVKARSSARSAAV
AVSGSAVIAKTIEMDAGLTDDELENQIKLEADQYIPYPLDEVAIDFEVQGPSPRNAERVEVLLAACRKENVEVREAALAL
AGVAAKVVDVEAYALERAYQLLANQLGGHVDDLTVAVVDIGATMTTLSVLHNGKTIYTREQLFGGRQLTEEIQRRYGLSV
EEAGLAKKQGGLPDDYQSEVLTPFREAVVQQVARSLQFFFAAGQYNDVDYILLAGGTASISGLDRLIQQKIGTPTVLANP
FADMTVSNKVNAAALAGDAPALMIACGLAMRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=194575 BGI51_RS04070 WP_133861494.1 879168..880232(-) (comM) [Pseudomonas oryzihabitans strain KNF2016]
GTGCTAGGGCTATTCAGAAAGAAGGCGAATACGCTGCTGGGTATCGACGTCAGTTCGACATCCGTGAAACTCATCGAGTT
GAGCCGTTCAGGCGGACGCTACCGGGTGGAGGCCTATGCGGTCGAGCCCCTGCCGGCCAATGCCGTGGTGGAAAAGAACA
TCGCCGAACTCGAAGGCGTGGGCCTGGCCATCGGCCGGGTGCTGGTCAAGGCGCGCAGCTCCGCGCGCAGCGCTGCGGTG
GCCGTCTCCGGCTCGGCGGTGATCGCCAAGACCATCGAGATGGATGCCGGCCTGACCGACGACGAGCTGGAAAACCAGAT
CAAGCTGGAAGCCGACCAGTACATTCCCTATCCGCTGGACGAGGTCGCCATCGACTTCGAGGTGCAGGGGCCGTCGCCGC
GCAACGCCGAGCGCGTCGAGGTGCTGCTGGCCGCCTGCCGGAAGGAAAACGTCGAGGTTCGCGAGGCGGCCCTGGCGCTG
GCCGGTGTCGCGGCCAAGGTGGTCGACGTCGAGGCCTATGCCTTGGAGCGCGCCTACCAGTTGCTGGCCAACCAGCTCGG
CGGCCATGTCGACGACCTGACCGTGGCGGTGGTCGACATCGGCGCCACCATGACCACCCTGAGCGTGCTGCACAACGGCA
AGACCATCTATACCCGCGAGCAGTTGTTCGGCGGTCGTCAGCTCACCGAGGAAATCCAGCGCCGCTACGGCCTCTCGGTG
GAGGAGGCCGGTCTGGCCAAGAAGCAGGGTGGATTGCCGGACGACTACCAGAGCGAGGTGCTGACGCCCTTCCGCGAGGC
CGTGGTGCAGCAGGTGGCGCGTTCGCTGCAGTTCTTTTTCGCCGCCGGGCAATACAATGATGTGGACTACATCTTGCTTG
CTGGAGGAACCGCGTCAATTTCCGGACTCGACCGCTTGATCCAGCAGAAAATCGGCACCCCCACGGTCCTGGCCAATCCC
TTCGCCGACATGACCGTCAGCAATAAGGTCAATGCGGCAGCCCTGGCGGGTGACGCCCCGGCGCTGATGATCGCCTGCGG
CCTGGCCATGAGGAGTTTCGACTAG

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	56.78	100	0.568
pilM	Acinetobacter baumannii D1279779	56.78	100	0.568
comM	Acinetobacter baylyi ADP1	55.367	100	0.554
pilM	Legionella pneumophila strain ERS1305867	44.915	100	0.449