Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BGI51_RS04050 Genome accession   NZ_CP017024
Coordinates   875168..877393 (-) Length   741 a.a.
NCBI ID   WP_187980378.1    Uniprot ID   -
Organism   Pseudomonas oryzihabitans strain KNF2016     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 870168..882393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGI51_RS04035 (BGI51_03990) - 871880..873478 (-) 1599 WP_187980376.1 AAA family ATPase -
  BGI51_RS04040 (BGI51_03995) aroB 873497..874591 (-) 1095 WP_187980377.1 3-dehydroquinate synthase -
  BGI51_RS04045 (BGI51_04000) aroK 874644..875162 (-) 519 WP_133861489.1 shikimate kinase AroK -
  BGI51_RS04050 (BGI51_04005) pilQ 875168..877393 (-) 2226 WP_187980378.1 type IV pilus secretin PilQ Machinery gene
  BGI51_RS04055 (BGI51_04010) - 877412..877930 (-) 519 WP_133861491.1 pilus assembly protein PilP -
  BGI51_RS04060 (BGI51_04015) pilO 877927..878580 (-) 654 WP_187980379.1 type 4a pilus biogenesis protein PilO -
  BGI51_RS04065 (BGI51_04020) - 878577..879167 (-) 591 WP_158893530.1 PilN domain-containing protein -
  BGI51_RS04070 (BGI51_04025) comM 879168..880232 (-) 1065 WP_133861494.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 79201.84 Da        Isoelectric Point: 8.8464

>NTDB_id=194574 BGI51_RS04050 WP_187980378.1 875168..877393(-) (pilQ) [Pseudomonas oryzihabitans strain KNF2016]
MNTTIAGRLGLALLLSSLAGQALAADLQALNVASLPGDRIELKLTFDQPVPVPKGYTIEQPARIALDLPGVANKLGTKSR
ELGNGNARSVTVVEAGNRTRLIINLTNLASYDTRADGRNLFVTIGGTAGRQTASAQANLTPNLPRAAAPATVTAPSSAPL
PGAVARTPLPPTQATSTVAAMTAPRPQLRGKAIRHIDFQRGPQGEGNVVIDLSETGINPDIQEQGGKIRLTFAGTQLPEE
LRVRLDVKDFATPVQFVNASADSGGASIVIEPTGTYDYLAYQTNNRLTLSVKPLTTEEKEKRAADRFTYTGEKLSLNFQD
IDVRSVLQLIADFTNLNLVASDTVQGNITLRLQNVPWDQALDLILKTKGLDKRQIGNVLLVAPADEIAARERQELESQKQ
IQQLAPLRRDLIQVNYAKAADIAKLFQSVTSADKTADERGSISVDERTNSIIAYQTQNRLDELRRIVSQLDIPVRQVMIE
ARLVEANVDYSKQLGVRWGGNASSGNFAVYGKDGATTVDPTTGQAFLPGTSTVGNFTSTNGVAPTPFVDMGVSGSTSGIG
VGFMVGGKMLDLQLSALQSSGNGEIISQPKVVTSDKETAKILRGTEIPYQEASSSGATSTSFKQAALSLEVTPQITPDNR
IIMEVKVNKDAPDYQNALNGVPPISKNEVNAKVLVSDGETIVLGGVFSNTQTKSTTKVPMLGDIPYVGRLFRRDSVTDSK
VELLIFLTPRIMNNQAIAVGR

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=194574 BGI51_RS04050 WP_187980378.1 875168..877393(-) (pilQ) [Pseudomonas oryzihabitans strain KNF2016]
GTGAACACTACTATCGCGGGACGACTGGGACTGGCCCTGCTGCTGAGCAGCCTGGCCGGTCAGGCCCTGGCAGCCGATCT
GCAGGCCTTGAACGTCGCCTCCCTGCCCGGGGATCGTATCGAACTCAAGCTGACCTTCGATCAGCCGGTGCCGGTGCCCA
AGGGCTACACCATCGAGCAGCCGGCGCGGATTGCCCTGGATCTGCCCGGCGTGGCCAACAAGCTGGGTACCAAGAGCCGC
GAGCTGGGCAATGGCAATGCTCGCAGCGTGACGGTGGTCGAGGCGGGAAATCGCACCCGCCTGATCATCAACCTCACCAA
CCTGGCCAGCTACGACACCCGGGCCGACGGCCGCAACCTGTTCGTCACCATCGGCGGCACCGCCGGTCGCCAGACTGCCA
GCGCCCAGGCCAATCTGACGCCCAACCTGCCGCGCGCCGCCGCGCCGGCCACCGTGACCGCACCCTCGTCCGCCCCCCTG
CCCGGTGCGGTCGCCCGCACGCCGCTGCCGCCGACCCAGGCCACTTCCACCGTAGCGGCCATGACCGCGCCGCGGCCGCA
ACTGCGCGGCAAGGCGATCCGCCATATCGATTTCCAGCGGGGTCCCCAGGGCGAGGGCAACGTGGTCATCGACCTGAGCG
AGACCGGCATCAACCCGGACATCCAGGAGCAGGGCGGCAAGATCCGCCTGACCTTCGCCGGTACCCAGCTGCCCGAAGAG
CTGCGCGTGCGCCTGGACGTCAAGGACTTCGCCACCCCCGTGCAGTTCGTCAACGCCTCCGCTGACAGCGGCGGGGCGTC
CATCGTCATCGAACCGACCGGGACCTACGACTACCTGGCCTACCAGACCAACAATCGTCTGACCCTGAGCGTCAAGCCGC
TCACCACCGAGGAAAAGGAAAAGCGCGCAGCCGATCGCTTCACCTATACCGGTGAAAAACTGTCGCTGAATTTCCAGGAC
ATCGACGTCCGCTCGGTGCTGCAGCTGATCGCCGATTTCACCAATCTCAACCTGGTGGCGAGCGACACCGTGCAGGGCAA
CATCACCCTGCGCCTGCAGAACGTGCCCTGGGACCAGGCGCTGGATCTGATCCTCAAGACCAAGGGTCTCGACAAGCGCC
AGATCGGCAACGTGCTGCTGGTTGCACCGGCCGACGAGATCGCCGCCCGCGAGCGTCAGGAGCTGGAATCCCAGAAGCAG
ATCCAGCAGCTGGCCCCGCTGCGTCGCGACCTGATCCAGGTCAACTACGCCAAGGCCGCCGATATCGCCAAGCTGTTCCA
GTCGGTGACCAGCGCCGACAAGACCGCCGACGAGCGCGGCTCCATCTCGGTGGACGAGCGCACCAACAGCATCATTGCCT
ACCAGACCCAGAATCGCCTGGACGAACTCCGGCGCATCGTCTCGCAGCTGGACATCCCGGTGCGCCAGGTGATGATCGAG
GCGCGGCTGGTGGAGGCCAACGTCGACTACAGCAAGCAGCTGGGCGTGCGCTGGGGCGGTAACGCCAGTTCGGGCAACTT
CGCGGTCTATGGCAAGGACGGCGCCACCACGGTCGATCCTACTACCGGTCAGGCCTTCCTGCCGGGCACCAGTACCGTGG
GTAATTTCACTTCTACCAACGGCGTCGCGCCCACGCCCTTCGTCGACATGGGCGTTTCCGGCAGCACCTCGGGCATCGGC
GTCGGCTTCATGGTCGGTGGCAAGATGCTCGACCTGCAGCTGTCCGCGCTGCAATCCAGTGGCAATGGCGAAATCATCTC
CCAGCCCAAGGTGGTGACCTCGGACAAGGAGACCGCCAAGATCCTGCGCGGTACCGAGATCCCCTACCAGGAAGCCAGCT
CCAGCGGTGCCACCAGCACCAGCTTCAAGCAGGCTGCCCTGTCGCTGGAGGTCACACCGCAGATCACCCCGGACAACCGC
ATCATCATGGAGGTCAAGGTCAACAAGGATGCCCCTGACTACCAGAATGCCCTCAACGGCGTGCCGCCGATCAGCAAGAA
CGAGGTCAATGCCAAGGTGCTGGTGAGCGATGGCGAGACCATCGTGCTGGGCGGGGTGTTCTCCAATACCCAGACCAAGT
CCACCACCAAGGTGCCGATGCTGGGGGATATTCCCTATGTCGGCCGACTGTTCCGCCGGGATTCGGTCACCGACAGCAAA
GTCGAGCTGCTGATCTTCCTCACGCCGCGTATCATGAACAACCAGGCGATAGCGGTTGGTCGATGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(39-124)

Bacterial type II/III secretion system short domain (Secretin_N)

(412-476)

Secretin and TonB N terminus short domain (STN)

(337-383)

Bacterial type II and III secretion system protein (Secretin)

(576-732)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

69.799

100

0.702
  comQ Acinetobacter baylyi ADP1

40.691

100

0.413
  pilQ Acinetobacter baumannii strain A118

39.474

100

0.405
  pilQ Acinetobacter baumannii D1279779

39.474

100

0.405
  pilQ Legionella pneumophila strain ERS1305867

37.222

97.166

0.362
  pilQ Legionella pneumophila strain Lp02

37.222

97.166

0.362

Multiple sequence alignment