Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BFW41_RS00590 Genome accession   NZ_CP016990
Coordinates   129547..131061 (-) Length   504 a.a.
NCBI ID   WP_118880121.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain ZYAH75     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 124547..136061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFW41_RS00565 (BFW41_00560) - 125673..126308 (-) 636 WP_118880118.1 nicotinamidase -
  BFW41_RS00570 (BFW41_00565) - 126384..127034 (+) 651 WP_118880119.1 DNA mismatch repair protein MutT -
  BFW41_RS00575 (BFW41_00570) - 127131..127616 (+) 486 WP_118880120.1 DUF523 domain-containing protein -
  BFW41_RS00580 (BFW41_00575) - 127562..128518 (-) 957 WP_016352357.1 acyltransferase -
  BFW41_RS00585 (BFW41_00580) - 128512..129426 (-) 915 WP_113994431.1 acyltransferase -
  BFW41_RS00590 (BFW41_00585) comM 129547..131061 (-) 1515 WP_118880121.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BFW41_RS00600 (BFW41_00590) ilvG 131445..133091 (+) 1647 WP_118880122.1 acetolactate synthase 2 catalytic subunit -
  BFW41_RS00605 (BFW41_00595) ilvM 133088..133339 (+) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  BFW41_RS00610 (BFW41_00600) - 133352..134296 (+) 945 WP_118880123.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54768.69 Da        Isoelectric Point: 7.2612

>NTDB_id=194372 BFW41_RS00590 WP_118880121.1 129547..131061(-) (comM) [Aeromonas hydrophila strain ZYAH75]
MSLAVVYSRASLGVAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQTTDALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRERVLAARERMLSRNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGWQTI
EKEHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=194372 BFW41_RS00590 WP_118880121.1 129547..131061(-) (comM) [Aeromonas hydrophila strain ZYAH75]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCTTGGGTGTTGCGGCCCCGCAAGTGACGGTGGAAGTCCATTTGTCCAA
CGGGCTGCCCGCCTTCAACATGGTGGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAGCACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAAGGCGGTCGT
TTCGATCTGGCCATCGCCATCGGCATCCTCGCCGCTTCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGCGAACTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGCGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCAGGGC
GCACCCTGCTGGTACCGCGGGAGAACGGTCCGGAGGCTTCCCTCATCCAAGACGCCGAAGTGCGCACCGCCCACCAGCTG
TTGGCCGTCACCGCCTGGCTGGCAGGCCAGTACGAACTGCCACTACCGGATCCCCAGACCACGGATGCCCTGCCCGATGT
GCCGGACCTGCAGGACGTGATCGGCCAGTCCCAGGCCAAGCGGGCGCTGGAGATTGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCTTGCCCGGCATCTTGCCGCCGCTGAGCGAACAG
GAAGCGCAGCAGACCGCCGCCATTCACTCCATCGGCGGCCTCACCCCGCGCGCCGGTCACTGGCATCACAGACCCTACCG
TACGCCGCACCACAGCGCCTCGGCGGTGGCGCTGGTGGGGGGTGGCAGCCACCCGCGGCCCGGTGAAATATCCCTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAACTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACC
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCTTGTGGACACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTTGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCACTGCTGCCCAAGGGCAGCCTGACCGGCAAGGCAGAGCGGGGA
GAGTCGAGCCAGCAGATCCGCGAGCGGGTACTGGCGGCGCGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAACTT
GCTTGATAGCCGTGAAATCGAAGAAATTTGCCGCTTATCGCCGCAGGATGCCGAGTTTCTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTGTCGCGCACCATAGCCGATCTGGCAGGATGGCAGACCATC
GAGAAGGAGCACCTGATCGAGGCGCTCGGCTACCGGGCCATGGACCGGCTGTTGTCACGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Vibrio campbellii strain DS40M4

62.351

99.603

0.621
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Glaesserella parasuis strain SC1401

60.355

100

0.607
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466

Multiple sequence alignment